Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00654 ATGATGGACCTAaccaacacccacaacaacacaaactcccaaacccaacccaacGGTTCCCTCAAACACCACCACCCCACCGCCGTGTCACGGCCACCTTCCACGGTGGTTTCCTCCTACAAAGAGTGTCTCAAAAACCATGCAGCCTCCATCGGCGGCCACGCGCTCGACGGATGCGGCGAATTCATGCCCTCCTCTTCCTCCAACCCCACAGAGCCACGGTCGCTCACGTGCGCCGCGTGTGGCTGCCACCGTAACTTCCACCGCCGCGACACACAGGATCATaaccccaaccccaaccccaaccccaaTTTCATAAGCTTCTACCACTCACCCCCGCCGCCACCCCACCGTGGGCCGGGCCCCTCCACGagcccaagcccaagcccgatgtcgagcccaagcccaCCGCCAATCTCCCACCATTTCCCTCCTTCCTCCCACCATCTCCGAGGCCCCATCACGGGCTTTAACTTCAACTCTTGGAACCCGAGCGGGAAGAAGAGGTACAGGACCAAGTTCAGCCAAGAGCAGAAGGAGAAGATGCAAAGCTTCTCCGAGAAATTGGGGTGGAGAATGCAGAAAGTGGATGAAGGAATGCTGCAAAATTTCTGCCACGAGATTGGCGTGTCAAGAGGGGTCTTCAAGGTTTGGATGCACAACAATAAGAACTCTTCAAGGAAGAGATCGTTGGAGCCTCTTGATAACAAGATCAACGCAAGTGCTACTGataataataataataatCCTTACAACACAAATGCCTCCAACCATCACATTAATTAA 786 0.4669 MMDLTNTHNNTNSQTQPNGSLKHHHPTAVSRPPSTVVSSYKECLKNHAASIGGHALDGCGEFMPSSSSNPTEPRSLTCAACGCHRNFHRRDTQDHNPNPNPNPNFISFYHSPPPPPHRGPGPSTSPSPSPMSSPSPPPISHHFPPSSHHLRGPITGFNFNSWNPSGKKRYRTKFSQEQKEKMQSFSEKLGWRMQKVDEGMLQNFCHEIGVSRGVFKVWMHNNKNSSRKRSLEPLDNKINASATDNNNNNPYNTNASNHHIN 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00654 261 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 40 91 IPR006456 -
Cca06g00654 261 MobiDBLite consensus disorder prediction 236 261 - -
Cca06g00654 261 MobiDBLite consensus disorder prediction 106 143 - -
Cca06g00654 261 Gene3D - 159 228 - -
Cca06g00654 261 MobiDBLite consensus disorder prediction 1 23 - -
Cca06g00654 261 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 228 - -
Cca06g00654 261 MobiDBLite consensus disorder prediction 89 178 - -
Cca06g00654 261 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 167 224 IPR006455 -
Cca06g00654 261 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 22 228 - -
Cca06g00654 261 SUPERFAMILY Homeodomain-like 158 228 IPR009057 -
Cca06g00654 261 MobiDBLite consensus disorder prediction 153 169 - -
Cca06g00654 261 Pfam ZF-HD protein dimerisation region 39 92 IPR006456 -
Cca06g00654 261 MobiDBLite consensus disorder prediction 1 34 - -
Cca06g00654 261 MobiDBLite consensus disorder prediction 225 261 - -
Cca06g00654 261 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 40 91 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00654 Cca-Chr6 18267788 18268997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00654 18 227 ZF-HD Transcription Factor Family AT5G15210 49.057 2.37e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca06g00654 ZF-HD_dimer 9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00654 - - gmx:100817446 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00654 06 18267788 18268997 Cca06g00654 06 18267788 18268997 ECH