Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00652 ATGAGCGATCACTTGGTGGTCTTCGTTGACCGTCTCGCGCGCCCTGTCCCTGTTGACCCTGTGGAGCAGCCGGCGCAGCTTCCTTCCGAGCCCTCTCCGCCTCCGGCCGCCGTGGATGCCGCCGCTGGGACCTCGGGAACCGCCACGCCGGAGGATGGCGACGTCGAGGGCGGCGATGAGGAGGAGCCGCTGATCCAGATGGCCGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAATTTGGAGACGCCCTGCGCCTGTAGCGGAAGTCTTAAGTATGCTCACAGGAAGTGTGTCCAGCACTGGTGTGATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAACCTGGCTATACTGCTCCACCACCTCGTCCTAATCCTGAAGAAACTACTATTGATATAGGAGGTGGCTGGACAATATCTGGCACCCCATTGGACTTGCGTGATCCCAGACTCTTGGCAATTGCAGAGGCAGAACGTCAATTCTTAGATGCTGAATATGATGAGTATGCTGCTTCCAATGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTTTGATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGATACTTCTGATGATGATCCATCCAATTTTTTCTCCCTTTTCTTGCTTCGAGCTGCTGGATTTTTATTACCTTGCTACATTATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTACTACAATCTGGGCAGCGTAGAGGATTACAGTTTGCAATAGCACCAGGACCACCCACTGTACACCAGGAGCAAGTGTAA 867 0.5317 MSDHLVVFVDRLARPVPVDPVEQPAQLPSEPSPPPAAVDAAAGTSGTATPEDGDVEGGDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDGDTSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPTVHQEQV 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00652 288 ProSiteProfiles Zinc finger RING-CH-type profile. 62 122 IPR011016 GO:0008270
Cca06g00652 288 CDD RING_CH-C4HC3_MARCH 70 116 - -
Cca06g00652 288 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 286 IPR033275 -
Cca06g00652 288 Coils Coil 158 178 - -
Cca06g00652 288 MobiDBLite consensus disorder prediction 21 35 - -
Cca06g00652 288 Pfam RING-variant domain 70 115 IPR011016 GO:0008270
Cca06g00652 288 Pfam Protein of unknown function (DUF3675) 121 240 IPR022143 -
Cca06g00652 288 SUPERFAMILY RING/U-box 68 120 - -
Cca06g00652 288 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 286 - -
Cca06g00652 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 125 IPR013083 -
Cca06g00652 288 MobiDBLite consensus disorder prediction 17 59 - -
Cca06g00652 288 SMART ringv_2 69 116 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00652 Cca-Chr6 18248249 18252314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00652 69 145 C3H Transcription Factor Family AT2G37950 37.079 3.04e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00652 - - gmx:100779674 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00652 06 18248249 18252314 Cca06g00652 06 18248249 18252314 ECH