Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00651 ATGTTGAATGTTGACGTAATTGGGAACAAAAAGAGGAAGAGGTGTGGGAGGGTTTTTAGGTTCAAAAACTTTGGTGAACCTGGATACCCCGTTATGTTTACGGGGCCATTTCGTGAGAACGTTAATGCATTACTTGAGTATGCGAATTTGGAGAGTAATTTAAGCATGGGAATGCCAATGTGGTCTTTTCAACTTGAAGTTCATCACCACCCACCTTTGCATATCTTATTGTTTGTGATTGAAGAGCCAATAGAAGCAGCACTCAATCGTCATTGCAAGCATTGTCAATACATTGGCTGGGGCAACCATTTCATTTGCAATAAGAAGTACCACTTCGTGTTGCCCTCAAAGGAGGCACTGGCAACCTGCAGGAGCTGTGAAGGATGCTGTGATGCAATTGCTACAATTAATAATGGTAAGTCAAAATTAATTGAATTACAGGGTCATATGCTGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTATGTGTCAATGGATTGGAAATGGGTTCGAATTTGGCTGGGAACCAGATCATGGAGTTTTGGAACCGTTTGTGCTACGGATTGCAAGCAAGGAAAGTGAGTTTGAATGATATTTCACAAAAGAGAGGAATGGAACTAAGACTTGTGAATGGAATAGCATACAATGAGCCATGGTTCGGTCGTTGGGGTTACAAATTTGGTCGAGGGTGCTTTGGTGTGACTCAATCCATGTACCACAAGGCCATAGAGGCAATAAGAAGCATGCCATTATGCTTGATCATACATCACATTGGCAATTCCAACCATGACATCCCCATCATCTTCTCAAGGTACCAAACCCTTTCAGATCAGTCCCTAGTGACCCTTGGTGACCTATTTCATTACATGTTAGACCTCAAATCTCGCCTTCCTCGTGAAACATGCATTGGTTCCTATAACACAAGTTCCTTATTGCTTGAAACTAATTGTAGATGGTCCCCTAAAAGAATTGAGATGGCAACACGAGTCATTGTTGAGGCACTCAAAAGAACCGAATTTAGATGGGTTTCAAGGCAACAAGTTAGAGACACTGCTCGTGCATACATTGGTGACACGGGTTTGCTAGATTTTGTCTTGAAGTCACTAGGAAACCATGTTGTAGGAAACTATTTGGTTCGTCGAAGCTTGAACCCTGTCACAAAAGTCTTGGAATATTGCTTAGAAGATATTTCTAATGTGTACCCTTGCAATGAAGGCTTGGTCATGAGTAACAAAGTCAAGGACAAGTACAAGATCACAAGAGCTCAACTAATGAAGGACATGATTTTTTTGTACAAGTATATTCTCACAGAACCAAAACCAATGATGGGGTCAGAATTTCTCTCAGCTATATCATTGGCTGCTAGGATAATTCTTGATGCCAAGTTTTTCATTAAGGATTACTTTGGAGATGTTCCTTACCAATTTGAATTAGGCTCGGAAGGAAAACTCACCCTTTATTGTACAATTTTGTTGAGGGGTAATGAGTACCTAAACAAGGCCATTATGCCACCCCATGAATGTATCACACTGAAGAACAATGCTACTATCAATGACTTGAGGCTAGAAGTTGAGAGGAACTTCAGAGAAATCTATTGGGGGTTAAGGAATTTTGTGGTGGAATCAATTGGGAACTTGAATGCCAACAATGGGGTACAAATGGTTTTTGGGCTAATTGAAGTGGGTGGAAAAGTGGTGCTTGAGGGTTGGGATGGTGGCATTGGAATAAACATGATTGAGCAAATATGTGAAAGTGATCCAAACAATGGTACTGTGGAATGCATTTGTGGAACTATAGATGATGATGGTGAAAGGATGGTCTCTTGTGATATTTGTGAAATTTGGCAGCACACTAGATGTGTTCGAATTCCAAATGATGAAGAAATTCCCCATATTTTTTTGTGTATAAAGTGTGAACAAGAAATTGTTATGTTCCCTTCATTGCCATAA 1956 0.4039 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFTGPFRENVNALLEYANLESNLSMGMPMWSFQLEVHHHPPLHILLFVIEEPIEAALNRHCKHCQYIGWGNHFICNKKYHFVLPSKEALATCRSCEGCCDAIATINNGKSKLIELQGHMLHGVFHSNGFGHLLCVNGLEMGSNLAGNQIMEFWNRLCYGLQARKVSLNDISQKRGMELRLVNGIAYNEPWFGRWGYKFGRGCFGVTQSMYHKAIEAIRSMPLCLIIHHIGNSNHDIPIIFSRYQTLSDQSLVTLGDLFHYMLDLKSRLPRETCIGSYNTSSLLLETNCRWSPKRIEMATRVIVEALKRTEFRWVSRQQVRDTARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNVYPCNEGLVMSNKVKDKYKITRAQLMKDMIFLYKYILTEPKPMMGSEFLSAISLAARIILDAKFFIKDYFGDVPYQFELGSEGKLTLYCTILLRGNEYLNKAIMPPHECITLKNNATINDLRLEVERNFREIYWGLRNFVVESIGNLNANNGVQMVFGLIEVGGKVVLEGWDGGIGINMIEQICESDPNNGTVECICGTIDDDGERMVSCDICEIWQHTRCVRIPNDEEIPHIFLCIKCEQEIVMFPSLP 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00651 651 ProSiteProfiles Zinc finger PHD-type profile. 593 643 IPR019787 -
Cca06g00651 651 SUPERFAMILY FYVE/PHD zinc finger 587 643 IPR011011 -
Cca06g00651 651 ProSitePatterns Zinc finger PHD-type signature. 596 640 IPR019786 -
Cca06g00651 651 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 651 - -
Cca06g00651 651 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 651 - -
Cca06g00651 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 645 IPR013083 -
Cca06g00651 651 SMART PHD_3 595 641 IPR001965 -
Cca06g00651 651 Pfam PHD-finger 596 642 IPR019787 -
Cca06g00651 651 CDD PHD_MMD1_like 595 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00651 Cca-Chr6 18227094 18230967 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00651 10 651 PHD Transcription Factor Family AT5G22260 52.252 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca06g00651 PHD 9.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00651 - - gmx:100780210 1229.16