Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00646 ATGGGGCCGACCACGCTTCGGCCGAACACACTCgagcctgaatgcccttcatcctcattcagAAGAGAAGGTGATGGAGTTGTATCAGAAGAAATGTTTAGGACCAATCCAGACAATTTTTATGCTGGGGCCAGACTTGTTGAGCATGACAAAACATCAATCTCAGATGTTTTCCGTGTATTTTTTGCTCTCACAATGGCAGCTGTTGCAATGTCACAATCTGGCCTCATGACCCCAGCAGCAAGTAAAGCAAAAAGTTCTGTTGCTTCTGTATTTGCTATTCTTGACCAGAAATCAAGGACAGACCCCAGTGACGAGTCAGGAATGACATTGCAAGAAGTGAAGGGAGAGATTGAGTTCCACCATGTCATTTTCAAGTATCCAACCAGGCCTAATGTTCTTGTATTCCAAGCTCTTTCCTTGACCATTCATGCAGGAGAGACAGTTGCTCTAGTAGGTGAAAGTGGAAGTGGAAAGTCTACAGTGATCTCATTGTTACAAAGATTTTATGAGCCAGATTCAGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCAGTATGGATAG 570 0.4123 MGPTTLRPNTLEPECPSSSFRREGDGVVSEEMFRTNPDNFYAGARLVEHDKTSISDVFRVFFALTMAAVAMSQSGLMTPAASKAKSSVASVFAILDQKSRTDPSDESGMTLQEVKGEIEFHHVIFKYPTRPNVLVFQALSLTIHAGETVALVGESGSGKSTVISLLQRFYEPDSGQITLDGTEIQKQYG 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00646 189 MobiDBLite consensus disorder prediction 1 24 - -
Cca06g00646 189 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 32 186 - -
Cca06g00646 189 Pfam ABC transporter 137 186 IPR003439 GO:0005524
Cca06g00646 189 Gene3D ABC transporter type 1, transmembrane domain 39 107 IPR036640 GO:0005524|GO:0016021
Cca06g00646 189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 186 IPR027417 -
Cca06g00646 189 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 32 186 IPR039421 -
Cca06g00646 189 Gene3D - 108 186 IPR027417 -
Cca06g00646 189 MobiDBLite consensus disorder prediction 1 16 - -
Cca06g00646 189 SUPERFAMILY ABC transporter transmembrane region 40 102 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00646 Cca-Chr6 18162302 18164105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00646 6 186 Calmodulin-binding Proteins AT2G36910 36.022 8.66e-35 127