Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00642 ATGTTCGAGATCCTTCCACAACATTCCTTCGCTATCAGTTTCAGTGGGCGCACCCTCTTCTCCTTCCCCTGTTTCCCCTTATATTCACTCCCCTTTCCACCCCATCTTTCCATTCAGCGATTCTCAATTATTTCTCCACCCTCTTCTTCTCTCTCGCAACAACCCATGTCTTCAGAGGCAGAGGTGCCAGATATTTCCTCTCTCTTCCAACGCTTCCAGCGGAACAGAGACATGTCTCTGTTTCTCCCCTTCCTCTTCGGCTTCTCCGACCCGGGAAGAGCTAGCGGCGACCCAGATCGGGAAACGCCTCCCGCGGAAGCCTCGCAGCGTCAAAGAATCATCTTGGTCAACCCCTTGACTCAGGGCATGGTGGTCATCGACGGCGCGTCCAGCCTCGAGGCTCTGTTTCGCGAGCTCGGGGGCGGGAAGGGTGGCCGGCCGCCGGCGTCGAAGGAGTCGATAGAGGCGATGCCGAGCGTGGAGATCGGAGAggggtgtggggatttggagtgtgtggtgtgtttggaggagtttggggttggtggggtgGCGAAGGAGATGCCTTGTAAGCATAAGTTTCATTCTAGTTGTATTGAGAAGTGGTTGGGGATTCATGGGAATTGCCCTGTTTGTAGGTATGAGATGCCTGTGGAGGAGAGGGATGATGGGAAGAAGAGGGAAGAGGAAGGGGGTGGTGAGGTTTGGGTTAGTTTTTCTTTTAATAGGAGTACTAGGAGAGGCCATGATCATGATCATGATCAACCTGCTTCTGCTGAGTCAAATGATGATTCTTCATCAAGCCATGGAGATGATGCTGTTGTGAGTTAG 828 0.4903 MFEILPQHSFAISFSGRTLFSFPCFPLYSLPFPPHLSIQRFSIISPPSSSLSQQPMSSEAEVPDISSLFQRFQRNRDMSLFLPFLFGFSDPGRASGDPDRETPPAEASQRQRIILVNPLTQGMVVIDGASSLEALFRELGGGKGGRPPASKESIEAMPSVEIGEGCGDLECVVCLEEFGVGGVAKEMPCKHKFHSSCIEKWLGIHGNCPVCRYEMPVEERDDGKKREEEGGGEVWVSFSFNRSTRRGHDHDHDQPASAESNDDSSSSHGDDAVVS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00642 275 MobiDBLite consensus disorder prediction 259 275 - -
Cca06g00642 275 CDD RING-H2_PA-TM-RING 170 212 - -
Cca06g00642 275 MobiDBLite consensus disorder prediction 243 258 - -
Cca06g00642 275 PANTHER - 65 224 - -
Cca06g00642 275 ProSiteProfiles Zinc finger RING-type profile. 171 212 IPR001841 -
Cca06g00642 275 Pfam Ring finger domain 170 212 IPR001841 -
Cca06g00642 275 SMART ring_2 171 211 IPR001841 -
Cca06g00642 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 65 224 - -
Cca06g00642 275 MobiDBLite consensus disorder prediction 219 275 - -
Cca06g00642 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 218 IPR013083 -
Cca06g00642 275 SUPERFAMILY RING/U-box 166 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00642 Cca-Chr6 18126593 18127754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00642 59 245 C3H Transcription Factor Family AT1G26800 58.201 9.63e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00642 - - ccaj:109816232 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00642 06 18126593 18127754 Cca06g00642 06 18126593 18127754 ECH