Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00640 ATGGATCTGCAAAACATGCAAAACCAAAGCATGCATTTTGTGCTGTCGACTGATGCCAAACCAAGGCTAAAATGGACTCCTGAGCTTCACCAACGGTTCATTGAAGCAACCAATCAGCTTGGAGGTGCAGATAAAGCAACTCCAAAGAGTCTCATGAGGGTGATGGGCATTCCAGGACTTACTTTGTACCACCTAAAGAGCCATTTACAGAAATATAGGCTTGGGAAAAGCCAACAACTTGAAACCTGCTCTGACAACAAACAAGAAGATTACATAGAAACCAAGAGCAGTGATGGCCATTGCAGCAGGGAAATCAGTCTTGGGGCCCAGAATCAAATTACTGAAAACATGCAGATTGCTCAGGCTCTCCAAATGCAAATGGAAGTACAAAGGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTGCAACTCAGAATTGAAGCTCAAGGGAAGTATTTACAGTCAGTTTTGAAAAAGGCACAGGAAGCACTTGCTGGATACAACTCTTCCCCTGTGGGAATAGAACTCACAAAAGCTGAACTTTCTCAGCTAGTTACCATCATCAACAATGCTTGTCCAAGCTCTCCCATCTCAGAACTCACAGAAACAAGAGGGTTGAGTTTAAACTGTGGAGGAGAAAGGAAAAGAGACAGAGGCACCATGTGTTCACTGGAAAGTTCTTTGACATCTTCTGAAAGCTCAGGGAGAAAGGAAGAGAAACAACCAATAGAAGAAATAGGAGAGTTCAAAAGCTCCAAGAGTGTTTCACTTGAATTGCCCTTAATGAACACTCACACTGAGGATAAAGCATCCAATGGAGGCTCAACCAATGAGGCTAGTGGAAGAAAGAGAACCAAATCTGATGATGGCAATTGTGTTGTTGAGCAACCATGTGGGAAAAGATGTAGCAACAAGTTGAGGAAAGCCAAGTTGTCAGAAATGCTTGACTTGAACAGCCAATGTCAGAGTGACATGGACTCAACAAGTTCAAAAACATTAGACTTAAACTGCAGCTTAAACTTTTGGGAACCATGA 1038 0.422 MDLQNMQNQSMHFVLSTDAKPRLKWTPELHQRFIEATNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLETCSDNKQEDYIETKSSDGHCSREISLGAQNQITENMQIAQALQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALAGYNSSPVGIELTKAELSQLVTIINNACPSSPISELTETRGLSLNCGGERKRDRGTMCSLESSLTSSESSGRKEEKQPIEEIGEFKSSKSVSLELPLMNTHTEDKASNGGSTNEASGRKRTKSDDGNCVVEQPCGKRCSNKLRKAKLSEMLDLNSQCQSDMDSTSSKTLDLNCSLNFWEP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00640 345 Pfam MYB-CC type transfactor, LHEQLE motif 117 163 IPR025756 -
Cca06g00640 345 MobiDBLite consensus disorder prediction 208 250 - -
Cca06g00640 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Cca06g00640 345 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Cca06g00640 345 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Cca06g00640 345 MobiDBLite consensus disorder prediction 264 281 - -
Cca06g00640 345 MobiDBLite consensus disorder prediction 264 291 - -
Cca06g00640 345 MobiDBLite consensus disorder prediction 233 248 - -
Cca06g00640 345 Gene3D - 19 77 - -
Cca06g00640 345 Coils Coil 120 140 - -
Cca06g00640 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 342 IPR044848 GO:0003700
Cca06g00640 345 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 5 342 - -
Cca06g00640 345 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00640 Cca-Chr6 18116898 18118913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00640 11 302 G2-like Transcription Factor Family AT1G69580 48.013 6.67e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca06g00640 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00640 - - gmx:100787178 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00640 06 18116898 18118913 Cca06g00640 06 18116898 18118913 ECH