Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00637 ATGGCTAAATCCAAGTGTTGCATGATCTCTTCACAGCAAAGCCAGAATGCCTCTTCTTGTTACCCTTTTCCTTCTCTTTCCATGATGGGGTCTCTCTCTCTTGCTTCCTCCAACTGTGCCACACTTTCGAATGCTTCTTCATCTCAAGAGAGTTGTGGCTATGCCTCACCAAATGGGAGGAGCACAAGCTGGACTTTTCCTTTCATGAGGGAGTTCCTTTCCTCTAACTTTGAAGTCTGTAGTGATGTTGTTGGGGTAGGGGAAAGTAACAGTTGTGACAAAATAAAGCAAAGTGCCAGGTTCAATGAAGAGAGTAACCCTAATGAGAACCTTGTCAGTGGCAAAGAGGTTGATAGTGGAAACTCCAAACTTTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAACTTGTGGCTCTTTATGGCCCTCAGAATTGGAATCTCATAGCTGAAAAACTAGAAGGAAGATCAGGGAAGAGTTGTAGATTGAGGTGGTTCAACCAGTTGGATCCAAGGATCAACAGAAGGGCATTCAGTGAAGAGGAGGAGGAGAGGCTAATGCAGGCACATAGAATCTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCGGGGAGAACAGATAACGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGGAAGTACAGAGAACAATCCAGTGCTTACAGGAGGAGGAGAATGAGCCAATCTGTTTACACAAGAGTGGAGCAAAATCCAAGCTTTGTTTGCAGCAGAGataataataataataatgataataataataataatGCCTCCACAACTGAACCAGAACCATCACCTTCCTATTGTCTCAACCTCCGCCACAATGGAGCAGCACTCAGCAATAACATGCCTAGTTTCCCGTCCTTCCAAGGAATTGTACCAGCTGTGGTTGGTAAGTTTGGCTTGAATGGTTATGGTGAGAGAGAAGCAATGTCAAACACTCCACGACATGTTGGAATGTGTGCTCAACAAGCACCATTTGATTTCTTCTCTGTTGGTAGAAGCAATGACATGATGGGGGAGTCTACGAGCCAGGTCAGATTCAGGGAAAGGACTAATGAATCTCATAACCATAATTGCCAATTATCTGGTTTCTACCCTCATTACCCCCAACAACACTTGACGGCAATGCAACAACTAGACAACAATTTTTACAGTGTTTTGAAATCCTCCTCAGCATCGACAACAAGCACAGCCAAGGAACCATCATCATCACCATGTGTCGCAGAAATGAAAGATAAAGTGGTGAATAGTGACCCCCCAGATGGTGTTCCACTTCCACCCCAATTTTTTGACTTCCTTGGAGTAGGAGCCACATGA 1362 0.4427 MAKSKCCMISSQQSQNASSCYPFPSLSMMGSLSLASSNCATLSNASSSQESCGYASPNGRSTSWTFPFMREFLSSNFEVCSDVVGVGESNSCDKIKQSARFNEESNPNENLVSGKEVDSGNSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMSQSVYTRVEQNPSFVCSRDNNNNNDNNNNNASTTEPEPSPSYCLNLRHNGAALSNNMPSFPSFQGIVPAVVGKFGLNGYGEREAMSNTPRHVGMCAQQAPFDFFSVGRSNDMMGESTSQVRFRERTNESHNHNCQLSGFYPHYPQQHLTAMQQLDNNFYSVLKSSSASTTSTAKEPSSSPCVAEMKDKVVNSDPPDGVPLPPQFFDFLGVGAT 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00637 453 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 228 IPR017930 -
Cca06g00637 453 CDD SANT 181 221 IPR001005 -
Cca06g00637 453 ProSiteProfiles Myb-like domain profile. 127 173 IPR001005 -
Cca06g00637 453 Gene3D - 127 178 - -
Cca06g00637 453 MobiDBLite consensus disorder prediction 239 280 - -
Cca06g00637 453 Gene3D - 180 250 - -
Cca06g00637 453 SUPERFAMILY Homeodomain-like 127 220 IPR009057 -
Cca06g00637 453 PANTHER MYB PROTEIN-RELATED 29 453 - -
Cca06g00637 453 ProSiteProfiles Myb-like domain profile. 174 224 IPR001005 -
Cca06g00637 453 Pfam Myb-like DNA-binding domain 127 173 IPR001005 -
Cca06g00637 453 Pfam Myb-like DNA-binding domain 179 222 IPR001005 -
Cca06g00637 453 PANTHER MYB TRANSCRIPTION FACTOR 29 453 - -
Cca06g00637 453 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 173 IPR017930 -
Cca06g00637 453 SMART sant 178 226 IPR001005 -
Cca06g00637 453 SMART sant 126 175 IPR001005 -
Cca06g00637 453 CDD SANT 130 171 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00637 Cca-Chr6 18050424 18052652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00637 125 252 MYB Transcription Factor Family AT1G69560 83.594 9.59e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g00637 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00637 K09422 - gmx:100776292 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00637 06 18050424 18052652 Cca06g00637 06 18050424 18052652 ECH