LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca06g00636	ATGATACTGCAACTCTCCCTCCGACCGACGTTGCACCGGAGCCCGGCCACCTCGGACCGCGGCCTCGTGTTCCGCGAGAAGGTACTCTTCCTCGAAACCCTAAACATAAACCCCTCGAAAGCCTTCCTCTTAAACCCCGCCATCCGCTCCGCCCCTCTCTCCACCCTGAAATCCGCCACGCGCTCCCTCTCCTCCCTGGGCCTCCCACGCGCCGCCGTGGCCCGCATCCTGGACATGCAccccctcctcctcacgtgcgacccctacacccacctctaccccctcctcgacttcctcctccACGAGGTCCCAATCCCCTACGACCACGTCCACCTCTCCCTCACCCGCTGCCCCAGGTTACTCGTCTCCAGCGTCGACCACCAGCTCCGCCCCACGCTCCACTTTCTCAGAAAGCTTGGCTTCCATGGGCCCCACCACCCCCTCACGTGCCACAACACCCTTCTCCTCGTCTCCAGCGTGCAGGACACCCTCTTGCCCAAGATTCAGTTTTTGAAGGGTTTGGGCCTCTCCCATGCCCAAGTGGCCAACATGGTCGTTAGGTCCCCTGCGCTGTTGACTTACAGCGTTCACAACAATTTGCGGCCAAAGGTGGAGTTTTTCTTCAAGGAGATGAATGGGGATGTGGCCGACCTCACGAGGTTTCCGCAGTATTTTTCTTTTAGCTTGGAACGGAGGATCAGGCCCAGGTATGAGAAGCTGCGTCAGCTTGGCTTGTCCTTTCGCTTGGAGGACATGTTGAAGGTTAGTGATGGCGAGTTTAATGCTAGGTTGGTTGAATTTAGGTTTAGGACGCTTGAGGAAGGACAACGGTTTTAG	837	0.5341	MILQLSLRPTLHRSPATSDRGLVFREKVLFLETLNINPSKAFLLNPAIRSAPLSTLKSATRSLSSLGLPRAAVARILDMHPLLLTCDPYTHLYPLLDFLLHEVPIPYDHVHLSLTRCPRLLVSSVDHQLRPTLHFLRKLGFHGPHHPLTCHNTLLLVSSVQDTLLPKIQFLKGLGLSHAQVANMVVRSPALLTYSVHNNLRPKVEFFFKEMNGDVADLTRFPQYFSFSLERRIRPRYEKLRQLGLSFRLEDMLKVSDGEFNARLVEFRFRTLEEGQRF	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca06g00636	278	PANTHER	CGI-12 PROTEIN-RELATED	12	273	IPR003690	GO:0003690\|GO:0006355
	Cca06g00636	278	SMART	mt_12	111	142	IPR003690	GO:0003690\|GO:0006355
	Cca06g00636	278	SMART	mt_12	74	106	IPR003690	GO:0003690\|GO:0006355
	Cca06g00636	278	SMART	mt_12	39	69	IPR003690	GO:0003690\|GO:0006355
	Cca06g00636	278	SMART	mt_12	215	246	IPR003690	GO:0003690\|GO:0006355
	Cca06g00636	278	SMART	mt_12	146	177	IPR003690	GO:0003690\|GO:0006355
	Cca06g00636	278	SMART	mt_12	182	214	IPR003690	GO:0003690\|GO:0006355
	Cca06g00636	278	PANTHER	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	12	273	-	-
	Cca06g00636	278	Pfam	mTERF	56	260	IPR003690	GO:0003690\|GO:0006355
	Cca06g00636	278	Gene3D	Transcription termination factor 3, mitochondrial	52	274	IPR038538	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca06g00636	Cca-Chr6	18009978	18013174	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Cca06g00636		mTERF	1.3e-35	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca06g00636	K15032		-	gmx:100785219	399.053