Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00635 ATGGCTTTCATTGGGTTGCTCTTGGTGGGGTTTCTCACAATGTTCTCCTCTGCTTATGGGTATGGCTATGGTGGTGGTTGGGTTAATGCACATGCTACCTTCTATGGAGGGAGTGATGCTTCAGGAACAATGGGTGGGGCTTGTGGGTATGGGAACCTCTACAGTCAGGGGTATGGAACAAACACTGCTGCACTGAGCACTGCTTTGTTCAACAATGGTTTGAGCTGTGGCTCATGCTATGAGATCAGGTGTGTGAATGACCACAGGTGGTGCCTTCCTGGCTCCATTTTGGTCACTGCCACTAATTTCTGTCCACCAAACAATGCCTTGCCAAACAATGCAGGAGGGTGGTGTAACCCTCCTTTGCACCATTTTGACCTCTCTCAGCCTGTTTTCCTAAGAATTGCTCAATACAGAGCTGGAATTGTGCCTGTGTCTTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGCATAAGGTTCACAATCAATGGTCATTCTTACTTCAACTTGGTCCTAATAACAAACGTAGGTGGTGCTGGTGATGTGCATGGTGTGGCCATCAAAGGGTCCAGAAGTGGGTGGATGCCAATGTCTAGGAACTGGGGTCAGAATTGGCAAAGCAACAACTACCTCAATGACCAAAGCCTCTCCTTCAAGGTCACCACAAGTGATGGCAGAACTGTGGTGTCCTACAATGTTGCCCCAGCTGGGTGGTCCTTTGGCCAAACCTACACTGGTGCTCAATTCCACTAG 753 0.4927 MAFIGLLLVGFLTMFSSAYGYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDHRWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHGVAIKGSRSGWMPMSRNWGQNWQSNNYLNDQSLSFKVTTSDGRTVVSYNVAPAGWSFGQTYTGAQFH 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00635 250 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cca06g00635 250 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cca06g00635 250 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Cca06g00635 250 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Cca06g00635 250 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Cca06g00635 250 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Cca06g00635 250 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Cca06g00635 250 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Cca06g00635 250 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Cca06g00635 250 PANTHER EXPANSIN 5 250 - -
Cca06g00635 250 Gene3D - 157 250 IPR036749 -
Cca06g00635 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Cca06g00635 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cca06g00635 250 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cca06g00635 250 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cca06g00635 250 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Cca06g00635 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Cca06g00635 250 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Cca06g00635 250 SMART dpbb_1 62 147 IPR007112 -
Cca06g00635 250 PANTHER EXPANSIN-A15 5 250 IPR002963 GO:0009664
Cca06g00635 250 Pfam Lytic transglycolase 62 147 IPR009009 -
Cca06g00635 250 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Cca06g00635 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Cca06g00635 250 Gene3D - 16 153 IPR036908 -
Cca06g00635 250 SUPERFAMILY Barwin-like endoglucanases 11 175 IPR036908 -
Cca06g00635 250 Pfam Expansin C-terminal domain 158 235 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00635 Cca-Chr6 18003590 18005898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00635 1 250 Expansin Gene Family AT2G03090 81.200 6.23e-152 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00635 - - gmx:100796316 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00635 06 18003590 18005898 Cca06g00635 06 18003590 18005898 ECH
Cca06g00635 06 18003590 18005898 Cca03g00593 03 10292948 10295443 ECH
Cca06g00635 06 18003590 18005898 Cca11g01970 11 45092336 45096033 ECH
Cca06g00635 06 18003590 18005898 Cca07g02175 07 49913654 49915078 ECH
Cca06g00635 06 18003590 18005898 Cca09g00234 09 5605522 5607699 ECH