Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00634 ATGAAATATAAATCTGACTTTGGAGAAAATGAATGGTACTTCTTTAGCCCAAGAGAGAGGAAGTACCCAAATGGGGTGAGGCCTAATAGAGCAACTGTTTCTGGGTATTGGAAGGCTACTGGCACTGACAAAGCAATCTATAGTGGGTCTAAGCATATTGGGGTGAAGAAAGCTTTGGTTTTCTACAAGGGTAAGCCACCAAAGGGTATCAAGACAGATTGGATTATGCATGAGTACAGATTAATTGGATCAAGAAGACAAGCCAATAGGCAAATTGGATCCATGAGGCTGGATGACTGGGTCTTGTGTAGGATCTATAAGAAGAAGAACATGGGAAAATCATTGGAGGCAAGAGAGGACTACCCTATATCCCAAATCAATATTGCACCTGCAAATAATGACAGTGATCAACATGAAGTAATGAAATTTCCAAGGACTAGCTCTCTCACTCATCTTTTGGAGATGGATTACTTGGGTCCAATATCACATATATTATCTGATGGCTCATTCAATTCAACCTTTGATTTTCAAATTAACACTGACAATGGAGGAATAGACCCGTTTGTAAAACCACAGCTGGTTGAAATGCCTAATAATGACCCTTATGCATCAGATTCAGGGAAGTACCAAGTGAAACAGAATAGCACCCTCAACCCCACCATATTTGTGAACCAAGTGTATGATCAGAGAGGATAA 696 0.4009 MKYKSDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHIGVKKALVFYKGKPPKGIKTDWIMHEYRLIGSRRQANRQIGSMRLDDWVLCRIYKKKNMGKSLEAREDYPISQINIAPANNDSDQHEVMKFPRTSSLTHLLEMDYLGPISHILSDGSFNSTFDFQINTDNGGIDPFVKPQLVEMPNNDPYASDSGKYQVKQNSTLNPTIFVNQVYDQRG 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00634 231 ProSiteProfiles NAC domain profile. 1 108 IPR003441 GO:0003677|GO:0006355
Cca06g00634 231 PANTHER NAC TRANSCRIPTION FACTOR 56 4 182 - -
Cca06g00634 231 Pfam No apical meristem (NAM) protein 5 81 IPR003441 GO:0003677|GO:0006355
Cca06g00634 231 PANTHER NAC DOMAIN-CONTAINING PROTEIN 1 4 182 - -
Cca06g00634 231 Gene3D NAC domain 1 113 IPR036093 GO:0003677|GO:0006355
Cca06g00634 231 SUPERFAMILY NAC domain 6 108 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00634 Cca-Chr6 17969601 17971041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00634 4 171 NAC Transcription Factor Family AT1G69490 62.011 4.67e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca06g00634 NAM 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00634 - - ccaj:109816242 480.33