Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00627 ATGGAGGGAAGAACAACCACCTCTGTACTCCCACCTGGCTTCAGGTTTCACCCCACTGATGAGGAACTAATTGTGTACTACCTTTGTAACCAAGCCACCTCAAGGCCATGCCCTGCATCAATCATCCCTGAAGTGGATATTTATAAATTTGATCCATGGGAATTACCTGATAAATCTGACTTTGGAGAAAATGAATGGTACTTCTTTAGCCCAAGAGAGAGGAAGTACCCAAATGGGGTGAGGCCTAATAGAGCAACTGTTTCTGGGTATTGGAAGGCTACTGGCACTGACAAAGCAATCTATAGTGGGTCTAAGCATATTGGGGTGAAGAAAGCTTTGGTTTTCTACAAGGGTAAGCCACCAAAGGGTATCAAGACAGATTGGATTATGCATGAGTACAGATTAATTGGATCAAGAAGACAAGCCAATAGGCAAATTGGATCCATGAGGCTGGATGACTGGGTCTTGTGTAGGATCTATAAGAAGAAGAACATGGGAAAATCATTGGAGGCAAGAGAGGACTACCCTATATCCCAAATCAATATTGCACCTGCAAATAATGACAGTGATCAACATGAAGTAATGAAATTTCCAAGGACTAGCTCTCTCACTCATCTTTTGGAGATGGATTACTTGGGTCCAATATCACATATATTATCTGATGGCTCATTCAATTCAACCTTTGATTTTCAAATTAACACTGACAATGGAGGAATAGACCCGTTTGTAAAACCACAGCTGGTTGAAATGCCTAATAATGACCCTTATGCATCAGATTCAGGGAAGTACCAAGTGAAACAGAATAGCACCCTCAACCCCACCATATTTGTGAACCAAGTGTATGATCAGAGAGGATAA 858 0.4149 MEGRTTTSVLPPGFRFHPTDEELIVYYLCNQATSRPCPASIIPEVDIYKFDPWELPDKSDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHIGVKKALVFYKGKPPKGIKTDWIMHEYRLIGSRRQANRQIGSMRLDDWVLCRIYKKKNMGKSLEAREDYPISQINIAPANNDSDQHEVMKFPRTSSLTHLLEMDYLGPISHILSDGSFNSTFDFQINTDNGGIDPFVKPQLVEMPNNDPYASDSGKYQVKQNSTLNPTIFVNQVYDQRG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00627 285 Pfam No apical meristem (NAM) protein 11 135 IPR003441 GO:0003677|GO:0006355
Cca06g00627 285 Gene3D NAC domain 19 167 IPR036093 GO:0003677|GO:0006355
Cca06g00627 285 SUPERFAMILY NAC domain 8 162 IPR036093 GO:0003677|GO:0006355
Cca06g00627 285 ProSiteProfiles NAC domain profile. 10 162 IPR003441 GO:0003677|GO:0006355
Cca06g00627 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 1 7 236 - -
Cca06g00627 285 PANTHER NAC TRANSCRIPTION FACTOR 56 7 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00627 Cca-Chr6 17863987 17866234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00627 5 225 NAC Transcription Factor Family AT1G69490 66.379 6.13e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca06g00627 NAM 3.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00627 - - gmx:732552 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00627 06 17863987 17866234 Cca06g00627 06 17863987 17866234 ECH