Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00625 ATGGGAAGGATGACATGCTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGACACCCGAAGAAGACAAGAAGCTTATTTCTTATGTTGAAAAACATGGTCACGGAAACTGGCGTTCATTTCCTGCCAAAGCGGATCTTCAAAGGTGTGGGAAGAGTTGCAGACTGAGGTGGATTAACTACCTGAAGCCAGATATAAAACGAGGAGACTTCAGCTTGGAGGAAGATCAGACCATTATTCAACTCCATGCTCTTCTAGGAAACAAATGGTCAATCATAGCAGCACATTTGCCCAAGAGAACAGACAATGAGATAAAGAACTATTGGAACACCAACATCAAGAAAAGACTCATCAGAATGGGCTTAGATCCTATAACCCACAAACCAATGAAGCCCAACACGTTTGAAGGCTATGGTGATAGTCATGATCACTCCAAGGACAGCATCAATATGGGCCACGTGGCACAATGGGAGAGTGCTCGAGTCGAAGCTGAAGCAAGAGGATCTATGTTGCAAGTAGGATCTGGATCCTCACTACTCCCTCGACTATTCCTAAGCAAAATTCCAACTCATCAACCTCTTTCAACCCAACACGGGACAATGTATAACATGTATGCCCTAGTGCTTGCAATAAATCATGATATTAGGTCATCGGTATCCACTTTGGTATCCCTAAGTTTCCCACCCTTACTACCAACATTGGACAATTCACGGACGCGGAAAGCTCACGCGGTAATGTCATAG 741 0.444 MGRMTCCEKVGLKKGPWTPEEDKKLISYVEKHGHGNWRSFPAKADLQRCGKSCRLRWINYLKPDIKRGDFSLEEDQTIIQLHALLGNKWSIIAAHLPKRTDNEIKNYWNTNIKKRLIRMGLDPITHKPMKPNTFEGYGDSHDHSKDSINMGHVAQWESARVEAEARGSMLQVGSGSSLLPRLFLSKIPTHQPLSTQHGTMYNMYALVLAINHDIRSSVSTLVSLSFPPLLPTLDNSRTRKAHAVMS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00625 246 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca06g00625 246 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca06g00625 246 PANTHER TRANSCRIPTION FACTOR MYB106 1 189 - -
Cca06g00625 246 CDD SANT 16 61 IPR001005 -
Cca06g00625 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca06g00625 246 CDD SANT 70 112 IPR001005 -
Cca06g00625 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca06g00625 246 Gene3D - 13 66 - -
Cca06g00625 246 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Cca06g00625 246 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca06g00625 246 SMART sant 13 63 IPR001005 -
Cca06g00625 246 SMART sant 66 114 IPR001005 -
Cca06g00625 246 Gene3D - 69 116 - -
Cca06g00625 246 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca06g00625 246 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00625 Cca-Chr6 17833657 17834620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00625 1 166 MYB Transcription Factor Family AT5G15310 69.277 3.81e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g00625 Myb_DNA-binding 6.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00625 K09422 - gmx:100785734 371.703