Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00624 ATGGGAAGGATGGCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGACACCTGAAGAAGACAAGAAGCTTATGTCTTATGTTGAAAAACATGGTCACGGAAACTGGCGTTCAGTTCCTGCCAAAGCGGGTCTTCTAAGATGTGGGAAGAGTTGCAGATTGAGGTGGATTAACTACCTCAAACCTGATATAAAACGAGGAAACTTCACATTTGAAGAAGATTGTACCATTATTCGACTCCATGCTCTTCTTGGAAACAACGTTCAGCGCTGCAACGCTGGTAAGTCCGTCACCCTGAAGAATCCTCCTGAGCTGGGGCACTAG 327 0.4618 MGRMACCEKVGLKKGPWTPEEDKKLMSYVEKHGHGNWRSVPAKAGLLRCGKSCRLRWINYLKPDIKRGNFTFEEDCTIIRLHALLGNNVQRCNAGKSVTLKNPPELGH 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00624 108 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 87 - -
Cca06g00624 108 SMART sant 13 63 IPR001005 -
Cca06g00624 108 CDD SANT 16 61 IPR001005 -
Cca06g00624 108 SUPERFAMILY Homeodomain-like 15 88 IPR009057 -
Cca06g00624 108 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca06g00624 108 Gene3D - 13 66 - -
Cca06g00624 108 PANTHER TRANSCRIPTION FACTOR MYB106 1 87 - -
Cca06g00624 108 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca06g00624 108 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00624 Cca-Chr6 17756468 17760015 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00624 1 87 MYB Transcription Factor Family AT3G01140 75.862 1.02e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca06g00624 Myb_DNA-binding 8.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00624 K09422 - gmx:100785734 171.4