Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00623 ATGAATGTTAATATATTCGCCTGGAATGTTAGAGGGGCAGCAGGAAGGATGAACAAAATTCATCTTGAAGAAACACTGCGTAAGGTTAAGCCAGATATGGTGTTTTTGTTTGAAGTCCATACTTTATTTGCAAAGGTTGAATCATTTTGGGAACGACTGCGCTACTATCCTATAGATATCCAAGAAGCTCGTGGTCATGCTGGCGGTGTTTGGGCTTTGGTTAAGGTTACTTCGACCTTACAATGTCAGGTAGTTGGCTCCCACCCACAAGCTATTTCAGTGCAGGTCTCTATGTCTGGGAAGGTGTGGTGTTGCACGGAGGTGTATGCCAATCCTGTCCCAGCTGAACGTGATCGATTATGGCAATATTTAAAGGAGCTTCGGCAGGtgatggtccttccatggttccttatagaAATGATGCGCGAACACATTTCTCTTTCAAACCCTCGACCCCAAATCCTTGACAAACATCGCGGTACCCAAACGCTCGTGAGGGATGAAAATCCTTTTCCTCATGCTCTCCTCAACAATCATTGCGTCCCTTTCTCAGGGTTCCGGCGAGCATGGCGGAGGGTCCTGCGAGCCCCGGCTGCGGCAGCCACGACAGCGGCGACCACAGCCCTCGCTCCAACATACGCGAGCAAGACAGTTTCATCACCAGCGAGTCCAGCAAAAGCGGCACACGAGGAATCCTCACACATGTTTGAGAATCATGGTGTCCAAATGCTAGGGCAAATAAGGCATGGTTTATGCCGTCCTCGTGCTATCTTGTTTAAAGTATTAGCAGATACTGTAGGTCTTGAAAGTAGGCTTATGATGGGTTTTCCAAATGATGGGGCTGCTGAATGTGTTGACTCGTACAAGCATATGTCAGTGATTGTTGTATTAAACTCTGTGGAACTGCTGGTTGATCTTATGCGTTTTCCTGGCCAACTATTACCACGATCAACCAAATCAATTCTCATGACACACATTTCTGCTGCAGGAGAGAGTGATTCCGCAGAAAATGATTCCTGTGATTCACCTTTAGAACCAAATAGCCCTTTATATGGGGTTTCAGAGAGTGTTGAAAAGGAGGAAAACCTCCAATTCTGTAGAAGATTTGAAGTGTCTTCAAATGATGCAATTACATCAACTGTTGAATCTCACCAGGTAGTTCTCATATCTGGTGAGACTGGTTGCGAAAAGACTACGCAGATTTATGCCACTGTAAGGAGTGGGTCAATAGCTATTACAACATCAACTTTGGATTCTCTGCTTGATCTCATGGCTGGTGGCATACTTTGGTTCACTCACCTTGCAATGAAGAACATAAATATCCATAAATATCCAATTGGAAAGCTAAGAGTGCAACCAGTTGGCATTATTATCTTTGCAGCAGTCATGGCAACTCTTGAAAAACACAAGCCAAGGATGAAGAAAATTGAGGAACCAGAGAGTTGGAGTTGCAGCGCTCAACACAGCGCTGGAAATCAAGTTTTGACAAGAAAAACTAGAAGAACCAGAGATCTAGCATTGCAGCGGTGA 1530 0.4412 MNVNIFAWNVRGAAGRMNKIHLEETLRKVKPDMVFLFEVHTLFAKVESFWERLRYYPIDIQEARGHAGGVWALVKVTSTLQCQVVGSHPQAISVQVSMSGKVWCCTEVYANPVPAERDRLWQYLKELRQVMVLPWFLIEMMREHISLSNPRPQILDKHRGTQTLVRDENPFPHALLNNHCVPFSGFRRAWRRVLRAPAAAATTAATTALAPTYASKTVSSPASPAKAAHEESSHMFENHGVQMLGQIRHGLCRPRAILFKVLADTVGLESRLMMGFPNDGAAECVDSYKHMSVIVVLNSVELLVDLMRFPGQLLPRSTKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSESVEKEENLQFCRRFEVSSNDAITSTVESHQVVLISGETGCEKTTQIYATVRSGSIAITTSTLDSLLDLMAGGILWFTHLAMKNINIHKYPIGKLRVQPVGIIIFAAVMATLEKHKPRMKKIEEPESWSCSAQHSAGNQVLTRKTRRTRDLALQR 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00623 509 MobiDBLite consensus disorder prediction 477 496 - -
Cca06g00623 509 Gene3D Endonuclease/exonuclease/phosphatase 1 145 IPR036691 -
Cca06g00623 509 Gene3D Cation efflux protein transmembrane domain 395 467 IPR027469 -
Cca06g00623 509 SUPERFAMILY DNase I-like 3 137 IPR036691 -
Cca06g00623 509 Pfam Ethylene-responsive protein kinase Le-CTR1 214 313 - -
Cca06g00623 509 MobiDBLite consensus disorder prediction 482 496 - -
Cca06g00623 509 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 219 375 - -
Cca06g00623 509 SUPERFAMILY Cation efflux protein transmembrane domain-like 399 465 IPR027469 -
Cca06g00623 509 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 219 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00623 Cca-Chr6 17745320 17756400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00623 223 379 MAP Kinase Kinase Kinase AT2G31010 71.069 1.26e-67 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00623 - - gmx:100807193 291.967