Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00621 ATGGGAAGGATGGCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGACACCCGAAGAAGACAAGAAGCTTATTTCTTATGTTGAAAAACATGGTCACGGAAACTGGCGTTCAGTTCCTGCCAAAGCGGATCTTCAAAGGTGTGGGAAGAGTTGCAGACTGAGGTGGATTAACTACCTGAAGCCAGATATAAAACGAGGAGACTTCAGCTTGGAGGAAGATCACACCATTCTTCAACTCCATGCTCTTCTAGGAAACAAATGGTCAATCATAGCAGCACATTTGCCCAAGAGAACAGACAATGAGATAAAGAACTATTGGAACACCAACATCAAGAAAAGACTCATCAGAATGGGCTTAGATCCTAAAACCCACAAACCAATGAAACCCAACACGTTTGAAGGCTATGGTGATAGTCATGATCACTCCAAGGACAGCATCAATATGGGCCACGTGGCACAATGGGAGAGTGCTCGAGTCGAAGCTGAAGCAAGAGGATCTATGTTGCAAGTAGGATCTGGATCCTCACTACTCCCTCGACTATTCCTAAGCAAAATTCCAACTCATCAACCTCTTTCAACCCAGCACGGGATAATGTATAACATGCATGCCCTAGTTCTTGCAATAAATCATGAAATTAAGTCATCAGTATCCACTTTGGGTATCCCTAAGTTTCCCACCCTTACTACCAACATTGGACAATTCACGGACGCGGAAAGCTCACGCGGTAATGTCATAGAAATTAATAGTCAAATTCAAAAAGAAATGAAAAATTATGTGTCAGACTTGAAAGATGATGATGACATTATGGTGGCTGTGGAAGCATTCAGAACAGCAAGATGTGAGAGTATTGAAGAGTTGTTTAACGGGTCCACTTCCATGGTAATATAA 894 0.4262 MGRMACCEKVGLKKGPWTPEEDKKLISYVEKHGHGNWRSVPAKADLQRCGKSCRLRWINYLKPDIKRGDFSLEEDHTILQLHALLGNKWSIIAAHLPKRTDNEIKNYWNTNIKKRLIRMGLDPKTHKPMKPNTFEGYGDSHDHSKDSINMGHVAQWESARVEAEARGSMLQVGSGSSLLPRLFLSKIPTHQPLSTQHGIMYNMHALVLAINHEIKSSVSTLGIPKFPTLTTNIGQFTDAESSRGNVIEINSQIQKEMKNYVSDLKDDDDIMVAVEAFRTARCESIEELFNGSTSMVI 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00621 297 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 212 - -
Cca06g00621 297 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca06g00621 297 CDD SANT 16 61 IPR001005 -
Cca06g00621 297 CDD SANT 70 112 IPR001005 -
Cca06g00621 297 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca06g00621 297 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Cca06g00621 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Cca06g00621 297 SMART sant 66 114 IPR001005 -
Cca06g00621 297 SMART sant 13 63 IPR001005 -
Cca06g00621 297 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca06g00621 297 Gene3D - 69 135 - -
Cca06g00621 297 Gene3D - 13 66 - -
Cca06g00621 297 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca06g00621 297 PANTHER TRANSCRIPTION FACTOR MYB106 1 212 - -
Cca06g00621 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00621 Cca-Chr6 17713869 17715363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00621 1 166 MYB Transcription Factor Family AT5G15310 68.072 5.12e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g00621 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00621 K09422 - gmx:100790887 442.195