Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00619 ATGGCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGACACCTGAAGAAGACAAGAAGCTTATGTCTTATGTTGAAAAACATGGTCACGGAAACTGGCGTTCAGTTCCTGCCAAAGCGGGTCTTCTAAGATGTGGGAAGAGTTGCAGATTGAGGTGGATTAACTACCTCAAACCTGATATAAAACGAGGAAACTTCACATTTGAAGAAGATTGTACCATTATTCGACTCCATGCTCTTCTTGGAAACAAGTGA 258 0.4264 MACCEKVGLKKGPWTPEEDKKLMSYVEKHGHGNWRSVPAKAGLLRCGKSCRLRWINYLKPDIKRGNFTFEEDCTIIRLHALLGNK 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00619 85 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 62 IPR017930 -
Cca06g00619 85 Gene3D - 10 63 - -
Cca06g00619 85 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 85 - -
Cca06g00619 85 PANTHER TRANSCRIPTION FACTOR MYB106 2 85 - -
Cca06g00619 85 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Cca06g00619 85 SMART sant 10 60 IPR001005 -
Cca06g00619 85 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Cca06g00619 85 CDD SANT 13 58 IPR001005 -
Cca06g00619 85 SUPERFAMILY Homeodomain-like 12 85 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00619 Cca-Chr6 17664572 17664955 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00619 3 85 MYB Transcription Factor Family AT4G21440 73.494 2.48e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca06g00619 Myb_DNA-binding 4.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00619 K09422 - gmx:100785734 167.162