Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00617 ATGGGAAGGTCACCATGCTGTGAGAAGACGGGGCTGAAGAAAGGACCATGGACACCTGAGGAAGACCAAAAGCTCATTGCTTTCATCGAAAAGAATGGCCATGGAAGCTGGCGTGCATTGCCTGCAAAAGCTGGGCTTAGAAGATGTGGAAAGAGTTGTAGACTTAGGTGGACAAATTACCTTAGACCTGACATAAAACGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATCATTCAACTTCATGCCCTTCTAGGAAACAGATGGTCAGCCATAGCCTCTCACTTGCCAAAGAGAACAGACAACGAAATCAAAAACTATTGGAACACACACCTCAAGAAGAGGCTCGACAAAATGGGCATTGACCCCACCACCCACAAGCCCAAAATGGAGTCCCTAGGGCACTCCAAGGACGGCTCCAACCTCAGCCACATGGCTCAGTGGGAAAGCGCTCGCCTCGAAGCCGAAGCCAGACTCGTCCGCGaatccaagctccaagaacaaacccaaacccaaactctaaccctaatcacaacaccaaccagactcatcctcaacaaaatcataccccaacaacaacaacgacaacaCTCTTTACCACCTTGCCTCGACGTCCTCAAAGCGTGGCAAGGTTCATGGTCAaacgacaacgataataataacaataataataaatatttatcatcatTGTCATCCTCACTAACACCACCATTACTAAACGACAAGAAAGTGCATAGCATGTATGCCATGATGCTTGCCACGGATGACCTAGAGTCACCAACTTCCACGTTGTGCTTCCCCGAGAGTAATGCTCACGTGCAAATCAATACTACCAACGTCAACATGGTGTCGACCAACCACCACGTGGGGTTAATGTTGATGAATGACGTCAACAACTATTTACTTCCTCCAACGACCACTGTCGCTGATTCTTCCGTGGATGAGTTCATCTTCGCCAAAAGTTTGGGCACGTGCGGTGCGGCTGCGTACAAACACAACGGTGCTGGTGACGAAGGGCTCGCGGAAACCGAGAAGAGTGTGTACGATACGATGTCGTGTTTGCAAGACCATGACGACATTATGGTGGCTGTTGACGCGTTGAGAGGTTTCAATAACGTTAACGACGTGTCCGAATTTGATTCCAACGAGGACCTAGCGGCGGAAAACATGGACGTCATCAATGGAGATGGAAGCAGCTGCGGAATGAGCTTCGAGGAGAATAAGGATTACTGGAATAGTATGCTTGGTTATAAGTGA 1257 0.4352 MGRSPCCEKTGLKKGPWTPEEDQKLIAFIEKNGHGSWRALPAKAGLRRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKRLDKMGIDPTTHKPKMESLGHSKDGSNLSHMAQWESARLEAEARLVRESKLQEQTQTQTLTLITTPTRLILNKIIPQQQQRQHSLPPCLDVLKAWQGSWSNDNDNNNNNNKYLSSLSSSLTPPLLNDKKVHSMYAMMLATDDLESPTSTLCFPESNAHVQINTTNVNMVSTNHHVGLMLMNDVNNYLLPPTTTVADSSVDEFIFAKSLGTCGAAAYKHNGAGDEGLAETEKSVYDTMSCLQDHDDIMVAVDALRGFNNVNDVSEFDSNEDLAAENMDVINGDGSSCGMSFEENKDYWNSMLGYK 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00617 418 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca06g00617 418 CDD SANT 69 112 IPR001005 -
Cca06g00617 418 Gene3D - 69 139 - -
Cca06g00617 418 CDD SANT 16 61 IPR001005 -
Cca06g00617 418 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 382 - -
Cca06g00617 418 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 382 - -
Cca06g00617 418 SMART sant 66 114 IPR001005 -
Cca06g00617 418 SMART sant 13 63 IPR001005 -
Cca06g00617 418 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca06g00617 418 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca06g00617 418 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca06g00617 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca06g00617 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca06g00617 418 Gene3D - 13 66 - -
Cca06g00617 418 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00617 Cca-Chr6 17600659 17603719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00617 1 175 MYB Transcription Factor Family AT5G15310 82.123 6.29e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g00617 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00617 K09422 - gmx:100792994 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00617 06 17600659 17603719 Cca06g00617 06 17600659 17603719 ECH