Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00614 ATGAGTAGCATGACAATTCCGGCATTCTCGTACTCTGCTTCCTTAACCTTCCAATggatgtatgatgttttccttagtttccggggtgcagatactcgcacgggtttcaccggtaacctttacaatgctctgcatgaaaaaggaatcaacaccttcatcgatgatcaagagcttggaaaaggagaagaaatcacgccagctctaatgcatgcgattcaaaattctaggattgccattgtggtcttttcagcaaactatgcatcatcatctttttgtttggaagaacttgtgaatatcatggagtgcataaatcacaagggtaggttggtttggcctgttttttatcaagtggatccatgtgatgtgcgccatcagaaagggagttttgcagaagcactagccatgcatgaaagaaaaattaatgacaaggagaaggtgaaaaagtggaggcttgcattgcaggaagctgctaatctctctggctggcatttcacatatgggtacgaatatgagttcattaggaagatggttcaagaggtctctaaagagattaatggtagccctttatacgttgctaagaacccagttgggttagagtctcgtgtgcagaaaatagcctcacttcttgatgttgaattaagtgatcaagtccacatggtagggatttatggcatgggaggaattggtaaaacgacacttgcatgtgcagtgtataatttcattgccgatcaatttgagagtctttgttttctggctgatattagagaaaattcagtgaagcacgggttggtacaactacaggagacacttctttatgatttagtaggggagaaggatgctaagttggggaatgtaaacaaaggaattccaataattaaaaacaggctctgtcaaaagaaaatacttttgattctcgatgatgtaaacaaattggagcatctagaagcacttgctggtggacttgattggtttggttctggaagcagaattattataacaacaagggataagcatttgctacatgtttatggtgtggaaaaaacttacgaagtagaagggttaaatcataaagaagccattgaattgtttagctggtgtgcattcaaaagaaaagaagttaatcctagttatatggacattttaaagagagtagtactttattctaatgggctcccattgtcccttgaaataataggttctgacttatttgataaaacagtgtcggaatggatttcggcattagatacttatgaaagaattcctcatcaaaatgttcagggaattcttagagtaagctatgatggcttaaaggaatttgagaaggaaatttttcttgacatagcatgcttctttaaaggaaacaaattaagtgatgtcataagcatactacacggtggtcgtggctctccaatagactatgttatccaggtgttgatcgataagtgtctcataaaaattgttcactgtcatgtgagaatgcatgacctgattgaggatatgggtagggacattgtacggcaagaatcacccttaaagccaggtgaacgtagtagattgtggTTCTCTAAAGATATTCTTCATGTTTTCAAAGAGAACAAGGGTTCGGACAAAACTGAAATCATCATGCTAAATCTGCTCAAAGACAAAGAAGTGCAATGGGATGGAAATGCGTTAAAGAGGATGGAAAACCTTAAAATACTGGTTGTAGAAAATGCTCGCTTCTCTAGAGGACCTAGTCATCTCCCAAAAAGTTTAAGAGTGCTGAAATGGTTTCGATATCCTGAAGCTTTGCTGCCAGCTCATTGTGATCCAAAGAAAATTGTCATACTTGACTTGTCTATGAGTTTCTTTTCATTTGACAATCAGCTCATCATGAAATTTAAGTCTTTGTCTGAAATGAAGTTAAGCGGTTGCAAATTATTAAAAcaagatttgtacaagtctcaagagttttccagaaattttagggaagatggaAAACTTAAGATAAAAAATGGCAAAGGACAAGAGCAAGAAACAATGTCTACCAATGTGAGAGATGTCGGTTCTTTTCCCTTTGAAAGAAATGCTAGTTTTGGTCATTGCTGTCTCACAGATGAATTCCTTGCTACCCTTCTTCCTTGCTTGCACCATGCGACACGTTTGTACCTCATGCGTAACAATATCACAGTCTTACCATCATGCATCAATGCATGCCACTCTTTAACAGAACTTTATTTGGATGGATGCAAGGAGCTTAAAGAAATCAGAGGGTTGCCACCAAATATAATACGTCTATCAGCAGTAAACTGCACGTCATTGACTTCCCAGTCCAAGGGAATGTTGCTGACTCAGGCACTGCATAGAACGGGGGATACATGTTTCTGTTTTCCGGTGCCAGGATGGACTATCAAAAGTTTGTTCAATCACTGCAGTGTCTTTCTGCTCCAATTTAGCAGTGATGAGTTTGACACATTGTGCACTGTGAATGAATGGAACCATGCTGAGATTTCATTTTCGGAAAATGAAAGAACGGATTTTGAATGGATGGGAGTTTATGTGAAGGAACACAATACAAACATGGCGGATATTCGATTTACAAATCCTGGGAAAATGCTCATTACTGGATCGTGTGAAAAGTAG 2622 0.1598 MSSMTIPAFSYSASLTFQWMYDVFLSFRGADTRTGFTGNLYNALHEKGINTFIDDQELGKGEEITPALMHAIQNSRIAIVVFSANYASSSFCLEELVNIMECINHKGRLVWPVFYQVDPCDVRHQKGSFAEALAMHERKINDKEKVKKWRLALQEAANLSGWHFTYGYEYEFIRKMVQEVSKEINGSPLYVAKNPVGLESRVQKIASLLDVELSDQVHMVGIYGMGGIGKTTLACAVYNFIADQFESLCFLADIRENSVKHGLVQLQETLLYDLVGEKDAKLGNVNKGIPIIKNRLCQKKILLILDDVNKLEHLEALAGGLDWFGSGSRIIITTRDKHLLHVYGVEKTYEVEGLNHKEAIELFSWCAFKRKEVNPSYMDILKRVVLYSNGLPLSLEIIGSDLFDKTVSEWISALDTYERIPHQNVQGILRVSYDGLKEFEKEIFLDIACFFKGNKLSDVISILHGGRGSPIDYVIQVLIDKCLIKIVHCHVRMHDLIEDMGRDIVRQESPLKPGERSRLWFSKDILHVFKENKGSDKTEIIMLNLLKDKEVQWDGNALKRMENLKILVVENARFSRGPSHLPKSLRVLKWFRYPEALLPAHCDPKKIVILDLSMSFFSFDNQLIMKFKSLSEMKLSGCKLLKQDLYKSQEFSRNFREDGKLKIKNGKGQEQETMSTNVRDVGSFPFERNASFGHCCLTDEFLATLLPCLHHATRLYLMRNNITVLPSCINACHSLTELYLDGCKELKEIRGLPPNIIRLSAVNCTSLTSQSKGMLLTQALHRTGDTCFCFPVPGWTIKSLFNHCSVFLLQFSSDEFDTLCTVNEWNHAEISFSENERTDFEWMGVYVKEHNTNMADIRFTNPGKMLITGSCEK 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00614 873 SUPERFAMILY "Winged helix" DNA-binding domain 424 529 IPR036390 -
Cca06g00614 873 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Cca06g00614 873 Gene3D - 183 347 IPR027417 -
Cca06g00614 873 CDD AAA 196 336 - -
Cca06g00614 873 Pfam TIR domain 21 186 IPR000157 GO:0007165
Cca06g00614 873 Gene3D Ribonuclease Inhibitor 513 771 IPR032675 -
Cca06g00614 873 SUPERFAMILY RNI-like 544 771 - -
Cca06g00614 873 PRINTS Disease resistance protein signature 388 402 - -
Cca06g00614 873 PRINTS Disease resistance protein signature 625 641 - -
Cca06g00614 873 PRINTS Disease resistance protein signature 219 234 - -
Cca06g00614 873 PRINTS Disease resistance protein signature 295 309 - -
Cca06g00614 873 Gene3D - 14 182 IPR035897 -
Cca06g00614 873 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 31 819 IPR044974 GO:0006952
Cca06g00614 873 Gene3D - 353 437 IPR042197 -
Cca06g00614 873 ProSiteProfiles TIR domain profile. 19 184 IPR000157 GO:0007165
Cca06g00614 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 447 IPR027417 -
Cca06g00614 873 PANTHER ARCHAEAL ATPASE 31 819 - -
Cca06g00614 873 SMART till_3 20 159 IPR000157 GO:0007165
Cca06g00614 873 Pfam NB-ARC domain 199 432 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00614 Cca-Chr6 17530184 17538001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00614 7 615 WRKY Transcription Factor Family AT4G12020 30.645 1.57e-67 244