Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00610 ATGAGCAGCGGCGGATCGTCCGGCACGGCGGCGAAGGAGAGGGAGAAGGCGCGGGTGAGTCGAACGTCGCTGATACTGTGGCACGCGCACCAAAACGACGCCGCGTCGGTGCGGAAGCTTCTCGAGGAGGATCCGTCGCTCGTGAAGGCTAGGGATTACGACAACCGCACGCCGCTGCACGTGGCGTCGCTCCACGGCTGGGTCGACGTCGCCAACTGCTTGATCGAATTCGGTGCTGACGTCAACGCTCAGGATCGTTGGAAAAACACTCCTCTGGCTGATGCAGAGGGAGCTGAAAGGACTGCGATGATTGAGCTTTTGGAGTCACATGGAGGCTTGTCTTATGGCCATAATGGAAGCCATTTTGAACCGAGGCCTGTTCTTCCTCCATTGCCTAACAAGTGTGATTGGGAAGTTGACCCTTCTGAGCTGGACTTCTCCAGTTCGGTCTGCATTGGGAAGGGATCTTTTGGTGAGATTTTAAGAGCCCATTGGCGTGGAACACCTGTTGCTGTCAAACGTATTCTTCCATCTCTGTCAGATGATAGATTGGTGATTCAGGACTTCAGGCATGAGGTTAATTTACTTGTGAAGCTTCGACACCCTAATGTCGTCCAATTTCTTGGAGCTGTTACTGACAGGAAGCCCCTTATGTTAATTACCGAGTATCTGAGAGGAGGTGATCTTCATAAGTACCTCAAGGACAAAGGTGCGCTTAGTCCTTCAACAGCTATCAGCTTTGCCTTGGATATTGCGAGAGGGATGGCCTATCTTCACAATGAACCAAATGTTATCATTCATCGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTCTAGTGCTGACCATTTAAAAGTTGGTGATTTTGGACTCAGTAAGCTTATTAAGGTTCAAAGTTCTCATGACGTATACAAGATGACAGGGGAAACTGGAAGCTACCGCTATATGGCTCCTGAAGTTTTCAAACACCGGAGATATGATAAGAAGGTTGATGTGTTCTCCTTTGCAATGATTCTGTATGAGATGCTTGAAGGTGAACCTCCTTTTTCAAATTATGAACCTTATGATGGAGCCAAATATGTGGCAGAAGGACACAGGCCTTCTTTTCGGGCAAAGGGCTATGTATCTGACCTGCGAGAGTTAACAGAGCAGTGTTGGGCTGCTGACATTAATCAAAGACCTTCGTTCATTGAGATCCTTAAACGACTTGAAAAGGTCAAGGAAAATTTGCCTTCAGATCATCACTGGAGTTTGTTCACTTCATGA 1269 0.4775 MSSGGSSGTAAKEREKARVSRTSLILWHAHQNDAASVRKLLEEDPSLVKARDYDNRTPLHVASLHGWVDVANCLIEFGADVNAQDRWKNTPLADAEGAERTAMIELLESHGGLSYGHNGSHFEPRPVLPPLPNKCDWEVDPSELDFSSSVCIGKGSFGEILRAHWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNVVQFLGAVTDRKPLMLITEYLRGGDLHKYLKDKGALSPSTAISFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLIKVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVFSFAMILYEMLEGEPPFSNYEPYDGAKYVAEGHRPSFRAKGYVSDLRELTEQCWAADINQRPSFIEILKRLEKVKENLPSDHHWSLFTS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00610 422 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 7 414 - -
Cca06g00610 422 SUPERFAMILY Protein kinase-like (PK-like) 145 417 IPR011009 -
Cca06g00610 422 Gene3D Phosphorylase Kinase; domain 1 138 225 - -
Cca06g00610 422 PRINTS Tyrosine kinase catalytic domain signature 221 234 IPR001245 GO:0004672|GO:0006468
Cca06g00610 422 PRINTS Tyrosine kinase catalytic domain signature 259 277 IPR001245 GO:0004672|GO:0006468
Cca06g00610 422 PRINTS Tyrosine kinase catalytic domain signature 375 397 IPR001245 GO:0004672|GO:0006468
Cca06g00610 422 SUPERFAMILY Ankyrin repeat 25 112 IPR036770 -
Cca06g00610 422 Gene3D - 3 118 IPR036770 -
Cca06g00610 422 ProSiteProfiles Ankyrin repeat profile. 54 86 IPR002110 GO:0005515
Cca06g00610 422 PIRSF ILK 1 422 - -
Cca06g00610 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Cca06g00610 422 CDD STKc_MAP3K-like 152 404 - -
Cca06g00610 422 SMART serkin_6 146 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00610 422 Gene3D Transferase(Phosphotransferase) domain 1 226 418 - -
Cca06g00610 422 ProSiteProfiles Ankyrin repeat region circular profile. 54 86 - -
Cca06g00610 422 SMART ANK_2a 54 83 IPR002110 GO:0005515
Cca06g00610 422 Pfam Ankyrin repeats (3 copies) 21 85 IPR002110 GO:0005515
Cca06g00610 422 ProSitePatterns Protein kinases ATP-binding region signature. 152 173 IPR017441 GO:0005524
Cca06g00610 422 Pfam Protein tyrosine and serine/threonine kinase 151 404 IPR001245 GO:0004672|GO:0006468
Cca06g00610 422 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 7 414 - -
Cca06g00610 422 ProSiteProfiles Protein kinase domain profile. 146 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00610 Cca-Chr6 17462884 17467954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00610 12 422 MAP Kinase Kinase Kinase AT1G14000 84.428 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Cca06g00610 PK_Tyr_Ser-Thr 4.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00610 - - gmx:100789273 805.823