Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00604 ATGGAGGAGACAGAGGAGTCCACTAATGCTAATCAGAAGTTCACTACCAAAAGAAGGAGCTTCAGGAATGGAGGAAACTCtcatgagcatcatcattatcatcaccatcaccaccaccatcatcatcatcactttcagcaccataatcaGCTGCTACAGTACTCAACTCAGCTTGGTTTGTGCAACAACCAGAACAAGTATCAAAGATACTATCCAGCTCTTCTTCCTCTACCTTCTCTTATACCTCTACAACAACTTCCTTTGACTCCACCCTTCCCTCAAAATCACACCATCGTGTCAAAATCTCATTTGCACAAGCCTCCATGCAAACTCAATAGCTCCCCCTCCTCAGATTACAAGCTCTCTCAGCCACCACTTGCTCCTGCTGAAAAGGAACTTCAGCAGCAAGCTAAGCCATCCTTTAAAGGAGATGATGGGAAGAAAATGATTCCAGCAAGGAAGCCACAGGCAGTAATTGTTGCAAGGAGGCCAGACTCTGGTGGCCAAGAAGGTTCTGTGATCTCTCTCCTTGCCAACCACTTTTTGGTACAGTTTGATCCATCACAGAAGATATATCATTACAATGTTGAAATCACTCCTCATCCCTCCAAGGATGTTGCAAGAGCAATCAAACAAAAGTTGGTAAACAACAATTCTGCAGTACTCTCAGGTGCTATTCCAGCATATGATGGGAGAAAGAATCTTTATAGTCCAGTTGAATTCCAAAGTGACAAGCTTGAGTTCTACATAAGCCTCCCAATCCCCAGTAGCAAGTTGACACCACCTTATGGAGAAATGTCTGACTTGAAAGAGAAGCATGAGCAGCTTAAACTCTTCAGGATAAATATCAAACTGGTGTCAAAGATCAATGGGAAGGAGTTGACTAACTACTTGAGCAAAGAGGGTGATGATTGGATTCCACTTCCACAGGATTATCTACATGCTTTGGATGTAGTTCTTAGGGAAAGTCCAACTGAGAAGTGCATATCTGTAGGGAGGTCATTCTATTCAAGTTCAATGGGAAGAAGCAAAGATATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGCCTTAGACCAACACAACAAGGACTTGCTCTCAATGTGGATTTCTCAGTAACTGCTTTCCATGAGAGCATAGGAGTGATTCCATACTTGCAGAAGCGCCTCGAGTTTCTTCGAGACCTTTCTCACAGGAAGACCGCTCAATTAAGTGGTGAAGAGAGGAAGGAAGTAGAGAGGGCGTTGAAGAACATCAGGGTCTTTGTTTGCCATAGGGAAACTGTTCAGCGATACCGTGTCCATGGCTTGACTGAGGAGGTTACTGAGAACCTTTGGTTTGCTGACAGAGATGGAAAGAATCTGAGGCTGGTGAACTACTTTAAAGACCACTATAACTACGACATACAATTCAGAAAATTGCCATGCTTGCAAATTAGTAGGAGTAAGCCTTGTTATCTCCCTATGGAGCTTTGTGTGATCTGTGAAGGCCAGAAGTTCCTTGGGAAACTATCTGATGATCAAACAGCAAAAATACTCAAGATGGGTTGCCAAAGACCGGGAGAACGAAAAGCCATTGTTGAAGGAGTCATGAGAGGAACTGTTGGGCCTACCAGTGGTGACCAGGAAAAAGAATTCAAACTCCAAGTCTCAAGAGAAATGACAAGGTTGACTGGGAGAATCCTTCACCCTCCCAAACTAAAGCTTGGAGATGGAGGTCATGTGAGAAACCTGACTCCTTCGCGTCACGATCGCCAATGGAACCTTCTTGATGGCCATGTCTTTGAAGGAACTACAATTGAAAGGTGGGCACTAATTAGTTTTGGGGGCACACCTGAGCAGAAATCCTATATCCCCAGATTCATAAACCAGTTATCACAAAGGTGTGAACAATTGGGCATTTTTCTCAACAAGAACACAATTATTAGCCCCCAGTTTGAGTCAAGCCAGATTCTTAACAATGTCACCCTTTTGGAATCCAAGCTCAAGAGAATACAGAGGACTGCCTCAAACAATCTCCAGCTTCTTATTTGCATAATGGAGAGAAAACACAAAGGGTATGCAGACTTAAAACGAATTGCTGAGACAAGTGTTGGTGTTGTAAGCCAATGCTGCCTGTACCCCAATCTCAGCAAGTTGAGTTCACAATTTTTGGCTAATTTGGCCCTCAAAATCAATGCCAAAGTTGGTGGATGCACTGTTGCCTTGTACAACTCACTGCCTTCGCAAATACCACGCCTCTTTCATATCGATGAGCCGGTGATATTCATGGGTGCAGATGTGACACATCCTCACCCTCTTGATGATTTCAGTCCATCTGTTGCTGCTGTGGTTGGTAGCATGAATTGGCCAACAGCAAACAAGTACATTTCAAGAATAAGGTCTCAAACACATAGGCAAGAAATCATCCAGGATCTTGGTGCAATGGTGGGGGAATTGCTTGATGATTTTTACCAAGAGGTAGAGAAACTCCCCAACAGAATCATTTTCTTCAGAGATGGGGTTAGTGAAACTCAGTTTTACAAAGTGCTTCAAGAGGAGCTACAATCCATCAGGTGTGCATGTTCAAAGTTTCCTGATTATAAGCCTTTCATTACTTTTGCAGTTGTGCAAAAGAGGCATCACACGAGGCTGTTTCCCTTCGAAACTGACCGGTCTTCAACTCAAAACCAAAACCATTTTCTATATGAAAACATTCCTCCAGGGACTGTGGTTGATTCTGTGATCACTCATCCAAAGGAATTTGATTTCTATCTCTGTAGCCATTGGGGTGTGAAAGGAACTAGTAGGCCAACTCACTACCATGTCTTGTGGGATGAAAACCAGTTTACTTCTGATGAACTTCAGAAATTGGTTTACAATTTATGCTACACTTTTGTTAGGTGTACCAAGCCAATTTCTTTGGTTCCTCCTGCATATTATGCACATTTAGCTGCTTATAGAGGCAGACTCTACCTTGAGAGATCAGAGTCATTAGGTTTGTTCAGAAGTACATCTACTTTATCCAGAGCTGCTCCTCCAAAGACAGCACCACTTCCTAAACTTAGTGAAAACATCAAGAAGCTCATGTTCTACTGCTAG 3087 0.4218 MEETEESTNANQKFTTKRRSFRNGGNSHEHHHYHHHHHHHHHHHFQHHNQLLQYSTQLGLCNNQNKYQRYYPALLPLPSLIPLQQLPLTPPFPQNHTIVSKSHLHKPPCKLNSSPSSDYKLSQPPLAPAEKELQQQAKPSFKGDDGKKMIPARKPQAVIVARRPDSGGQEGSVISLLANHFLVQFDPSQKIYHYNVEITPHPSKDVARAIKQKLVNNNSAVLSGAIPAYDGRKNLYSPVEFQSDKLEFYISLPIPSSKLTPPYGEMSDLKEKHEQLKLFRINIKLVSKINGKELTNYLSKEGDDWIPLPQDYLHALDVVLRESPTEKCISVGRSFYSSSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLRDLSHRKTAQLSGEERKEVERALKNIRVFVCHRETVQRYRVHGLTEEVTENLWFADRDGKNLRLVNYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPGERKAIVEGVMRGTVGPTSGDQEKEFKLQVSREMTRLTGRILHPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVFEGTTIERWALISFGGTPEQKSYIPRFINQLSQRCEQLGIFLNKNTIISPQFESSQILNNVTLLESKLKRIQRTASNNLQLLICIMERKHKGYADLKRIAETSVGVVSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFHIDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGAMVGELLDDFYQEVEKLPNRIIFFRDGVSETQFYKVLQEELQSIRCACSKFPDYKPFITFAVVQKRHHTRLFPFETDRSSTQNQNHFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSTSTLSRAAPPKTAPLPKLSENIKKLMFYC 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00604 1028 ProSiteProfiles PAZ domain profile. 389 498 IPR003100 GO:0005515
Cca06g00604 1028 MobiDBLite consensus disorder prediction 129 148 - -
Cca06g00604 1028 SMART Piwi_a_2 677 989 IPR003165 GO:0003676
Cca06g00604 1028 SMART PAZ_2_a_3 389 529 IPR003100 GO:0005515
Cca06g00604 1028 ProSiteProfiles Piwi domain profile. 677 989 IPR003165 GO:0003676
Cca06g00604 1028 MobiDBLite consensus disorder prediction 97 121 - -
Cca06g00604 1028 MobiDBLite consensus disorder prediction 97 124 - -
Cca06g00604 1028 Pfam Piwi domain 678 986 IPR003165 GO:0003676
Cca06g00604 1028 SMART DUF1785_2 329 381 IPR014811 -
Cca06g00604 1028 SUPERFAMILY Ribonuclease H-like 662 989 IPR012337 -
Cca06g00604 1028 Gene3D - 749 1028 IPR036397 GO:0003676
Cca06g00604 1028 Pfam PAZ domain 393 514 IPR003100 GO:0005515
Cca06g00604 1028 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 115 1027 - -
Cca06g00604 1028 PANTHER PROTEIN ARGONAUTE 7 115 1027 - -
Cca06g00604 1028 Pfam Argonaute linker 1 domain 330 379 IPR014811 -
Cca06g00604 1028 Gene3D - 563 739 - -
Cca06g00604 1028 SUPERFAMILY PAZ domain 376 534 IPR036085 GO:0005515
Cca06g00604 1028 CDD PAZ_argonaute_like 385 497 - -
Cca06g00604 1028 CDD Piwi_ago-like 546 988 IPR045246 -
Cca06g00604 1028 MobiDBLite consensus disorder prediction 1 49 - -
Cca06g00604 1028 Gene3D paz domain 375 502 - -
Cca06g00604 1028 Pfam N-terminal domain of argonaute 174 320 IPR032474 -
Cca06g00604 1028 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00604 Cca-Chr6 17372423 17378010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00604 168 1028 Eukaryotic Initiation Factors Gene Family AT1G48410 42.047 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00604 K11593 - gmx:100797755 1902.87