Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00599 ATGGCTGGCGCCGGAAATGGGGGCCTCCCGCCGTGGAAGGAGGCGCCGCCGCCGCCTCGACCCACCATCAGCCTCCCTCCGCGGCCTGCTTCCATGGACACCCTTTTCACCGGCGGCTTCAGCCCCGGCCCCATGACTCTTCTCTCCAACTTTCTCGCTGATGGGGATGACTGCAAGTCCTTCTCTCAGCTCCTCGCCGGAGCTATGACGTCTCCGGTCACCGGCGCCGCCGTACTTGACTCACCTGCTGGCCTCTTCTCGCCCAATCAGGTGTCTTTTGGAATGACACACCAGCAGGCCCTAGCACAGGTCTCAGTTCAGGCTGCACACACCAACTCAAATATCCACATCCAGCCTCAACATTCACTGCCTCTATCAGTATCACAGGTTCCTGCAGCAGCTGCTTCCAACACCACACAACACCTGATACCACCCTTATCTGCAGACTCTTGGGCTGCAATGGCCGAATCCGCCGATCATTCTCACGCCGAACAAAGATCTCAATCTTCATCGATGAACGTCGACAAGCCTGCAGATGATGGCTACAACTGGAGGAAGTATGGCCAGAAACAGGTGAAGGGTAGCGAGTTTCCTAGAAGCTATTACAAGTGCACACATCCAAACTGTCCTGTGAAGAAAAAAGTGGAGCGGTCGCTTGAGGGTCACGTAACTGCGATTATATACAAAGGAGAACACAATCACCAACGTCCTCAGCCTAACAAGCGCTCCAAAGACACCATCATGGCTTCAAATGAAAATGAAAATGTGCAAGGGAATGTGGATTCATCTCATCAAGGGGCAAGCACAAACTCGATGATGAAGATGGATCCTGAGTCGAGTCAGGCAACGGCAGATCGGCTATCAGGAACAAGTGACAGTGAGGAAGTTGGTGATCATGAAACTGAAGTTGATGAGAAGAATGTTGAGCTTGACCCCAAGAGGAGAAAAACAGAAGTCATGCACTCAGATCCAGCTTCTTCACATAGGACTGTCACTGAGCCCAGAATCATTGTGCAAACAACAAGTGAAGTTGATCTCTTAGATGATGGGTATAGATGGCGAAAATATGGGCAGAAAGTTGTCAAAGGCAACCCATATCCTAGGAGCTATTACAAATGTACAACCCCGGGTTGTAATGTGAGAAAGCATGTGGAAAGGGCTTCAACAGATCCTAAAGCTGTCATAACAACATATGAAGGAAAACACAATCATGATGTGCCAGCAGCCAAGACTAACAGCCACACTATGGCCAGCAATACTGCATCACAGTTAAAATCACAGAATTCCAATCCTGAGAAGCATAGTTTTGGCAGCAGAGATACCGGTGGCAACGAACAACAGCCGGTGGCGCGTCTACGGCTGAAGGAAGAGCAGATAACCTAG 1383 0.5054 MAGAGNGGLPPWKEAPPPPRPTISLPPRPASMDTLFTGGFSPGPMTLLSNFLADGDDCKSFSQLLAGAMTSPVTGAAVLDSPAGLFSPNQVSFGMTHQQALAQVSVQAAHTNSNIHIQPQHSLPLSVSQVPAAAASNTTQHLIPPLSADSWAAMAESADHSHAEQRSQSSSMNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGHVTAIIYKGEHNHQRPQPNKRSKDTIMASNENENVQGNVDSSHQGASTNSMMKMDPESSQATADRLSGTSDSEEVGDHETEVDEKNVELDPKRRKTEVMHSDPASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTMASNTASQLKSQNSNPEKHSFGSRDTGGNEQQPVARLRLKEEQIT 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00599 460 Pfam WRKY DNA -binding domain 179 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g00599 460 Pfam WRKY DNA -binding domain 348 404 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g00599 460 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 74 459 - -
Cca06g00599 460 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 15 74 - -
Cca06g00599 460 MobiDBLite consensus disorder prediction 291 323 - -
Cca06g00599 460 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 74 459 IPR044810 GO:0003700
Cca06g00599 460 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 74 IPR044810 GO:0003700
Cca06g00599 460 MobiDBLite consensus disorder prediction 252 331 - -
Cca06g00599 460 SUPERFAMILY WRKY DNA-binding domain 176 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca06g00599 460 ProSiteProfiles WRKY domain profile. 179 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g00599 460 MobiDBLite consensus disorder prediction 409 445 - -
Cca06g00599 460 SMART WRKY_cls 178 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g00599 460 SMART WRKY_cls 347 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g00599 460 SUPERFAMILY WRKY DNA-binding domain 339 407 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca06g00599 460 MobiDBLite consensus disorder prediction 11 26 - -
Cca06g00599 460 MobiDBLite consensus disorder prediction 1 32 - -
Cca06g00599 460 ProSiteProfiles WRKY domain profile. 342 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g00599 460 MobiDBLite consensus disorder prediction 401 460 - -
Cca06g00599 460 Gene3D WRKY domain 163 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca06g00599 460 Gene3D WRKY domain 332 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca06g00599 460 MobiDBLite consensus disorder prediction 252 290 - -
Cca06g00599 460 MobiDBLite consensus disorder prediction 153 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00599 Cca-Chr6 17273051 17279320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00599 20 65 WRKY Transcription Factor Family AT2G03340 66.667 3.95e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca06g00599 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00599 - - gmx:100127369 752.666