Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00581 ATGGAGAATATGGAAGTTGACAGCTGCGAGAAGAAGAAGCAACCAAAGGACTTGTTCAAAGCTGCCGAAGAGGGTGACGCCTCAGCCTTCAAATCCCTCTCTCATCAAACCCTTTCCAATGCCCTCTCTCTCACCAACGACGACCGCCGCTCCCTTCTCCACGTCGCCGTCGCTTCCGGTCACTTCCAGGTGGTGGAGATCCTCTCATCCTGTGATGGGTCTGCTGCTGTCGTCAATTCTGCTGATGAGGAAGGCTGGGCGCCGCTTCACTCAGCAGCCAGCATTGGGAATTCGGAGATTGTCGAGATTCTCTTGACCAAAGGAGTTGATGTTAATCTAAAAAATGATGGGGGTCGCACTGCTTTACACTATGCGGCCAGCAAAGGTTGGTTGAAGATCGCTGAAATGCTCATCTCCCATGATGCCAAGATTAATATAAAGGATAAGGTTGGTTGCACTCCATTGCATCGAGCAGCTAGCACTGGAAAATCTGAGATGTGTGAACTTTTGATTGAAGAAGGAGCAGAGGTTGATGCCGTTGATAAAGCTGGCCAAACCCCTCTAATGAATGCTGTGATTTGCTGTAACAAAGAGGTAGCCCTCCTTCTGATAAGACATGGAGCAGCTGTAGATGTGGAGGACAAGGAAGGGTACACAGTGCTTGGTCGAGCTACAGATGAATTTAGACCAATATTAATTGATGCTACCAAGGCCATGCTTGAGTAG 726 0.4876 MENMEVDSCEKKKQPKDLFKAAEEGDASAFKSLSHQTLSNALSLTNDDRRSLLHVAVASGHFQVVEILSSCDGSAAVVNSADEEGWAPLHSAASIGNSEIVEILLTKGVDVNLKNDGGRTALHYAASKGWLKIAEMLISHDAKINIKDKVGCTPLHRAASTGKSEMCELLIEEGAEVDAVDKAGQTPLMNAVICCNKEVALLLIRHGAAVDVEDKEGYTVLGRATDEFRPILIDATKAMLE 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00581 241 SMART ANK_2a 48 77 IPR002110 GO:0005515
Cca06g00581 241 SMART ANK_2a 150 179 IPR002110 GO:0005515
Cca06g00581 241 SMART ANK_2a 84 113 IPR002110 GO:0005515
Cca06g00581 241 SMART ANK_2a 183 212 IPR002110 GO:0005515
Cca06g00581 241 SMART ANK_2a 117 146 IPR002110 GO:0005515
Cca06g00581 241 Pfam Ankyrin repeats (3 copies) 82 148 IPR002110 GO:0005515
Cca06g00581 241 Pfam Ankyrin repeats (3 copies) 151 214 IPR002110 GO:0005515
Cca06g00581 241 ProSiteProfiles Ankyrin repeat profile. 150 182 IPR002110 GO:0005515
Cca06g00581 241 Gene3D - 123 239 IPR036770 -
Cca06g00581 241 ProSiteProfiles Ankyrin repeat profile. 183 215 IPR002110 GO:0005515
Cca06g00581 241 Gene3D - 9 122 IPR036770 -
Cca06g00581 241 ProSiteProfiles Ankyrin repeat region circular profile. 117 149 - -
Cca06g00581 241 ProSiteProfiles Ankyrin repeat region circular profile. 84 116 - -
Cca06g00581 241 ProSiteProfiles Ankyrin repeat region circular profile. 150 182 - -
Cca06g00581 241 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 77 237 - -
Cca06g00581 241 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 19 116 - -
Cca06g00581 241 ProSiteProfiles Ankyrin repeat region circular profile. 183 215 - -
Cca06g00581 241 SUPERFAMILY Ankyrin repeat 18 225 IPR036770 -
Cca06g00581 241 PRINTS Ankyrin repeat signature 118 133 IPR002110 GO:0005515
Cca06g00581 241 PRINTS Ankyrin repeat signature 166 180 IPR002110 GO:0005515
Cca06g00581 241 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Cca06g00581 241 ProSiteProfiles Ankyrin repeat profile. 117 149 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00581 21 207 Miscellaneous Gene Families AT1G07710 35.417 2.61e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00581 K06694 - gmx:100795610 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00581 06 16961994 16966082 Cca06g00581 06 16961994 16966082 ECH