Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00558 ATGTCTCACACCACACTCCGACACGACATCATCGCCAACATGTTTTTCTCTCTCTCCATTGGCTCTGTCGCATTGCCTCTCAGATGCACTGCCAACCTCCATGCCCAACCTTCTTCTTTCCCTCCCTTTCTTCCGAGGGAAGTTCACTCCATCCAAGACCCCTTCGCCACCAAGCTCGCCATGCGCATTCAGAGGCTACCAGTCCCTGTTAGGTTCTCAGAAAATCCCATCATGAGTAGTTGTGTGAAGCCACTGGTGCTGAGCAAGGAAACTCCAGTTGTTCTTCTACATGGTTTTGACAGCTCATGTTTAGAATGGAGATATGTATTACCATTGCTTGAGGAATTTGGTTTTGAGACCTGGGCCATTGACATTCTGGGTTGGGGTTTCTCTGATTTAGAAAAACTTCCTCCCTGTGATGTGGTATCAAAGCGTGATCACTTCTACCAGTTTTGGAAGTCCTACATCAGAAAGCCAATGATATTGGTTGGACCAAGCCTTGGCTCTGCTGTTGCCATTGACTTTGCAGTCAATTATCCAGAAGCTGTGGAGAAGCTTGTTCTGATTGGTGCTAGTGTATATGCAAAGGGAACTGGCAAGCTAGCAACCTTACCTGCAGCGGTAGCCTATGCCGGGGTTAATTTTTTGAAGAGCTTTCCATTACGCTTGTATGCCACCCAGTTGACCTTCAAAAACATTTCCTTCAGCACCAGCCTTGATTGGACTAATGTGGGCCGCTTACATTGTTTAATGCCTTGGTGGGATGATGCTACTGTGGATTTTATGACAAGTGGTGGTTACAATGTTACTTCTTTGATAGGAAAGCAACTACACTGTGAATTACCTGATGCAATTATACGCCAAATACCCAGTTGTGGACATCTTCCTCATCTGGAAAGACCAGATTTTACTAACAAATTAATAGTTGAATTTGTGCAAAGAGAGGCTAAGAAATTAAGTCAATGTGTTGCACAAGTATGA 981 0.4465 MSHTTLRHDIIANMFFSLSIGSVALPLRCTANLHAQPSSFPPFLPREVHSIQDPFATKLAMRIQRLPVPVRFSENPIMSSCVKPLVLSKETPVVLLHGFDSSCLEWRYVLPLLEEFGFETWAIDILGWGFSDLEKLPPCDVVSKRDHFYQFWKSYIRKPMILVGPSLGSAVAIDFAVNYPEAVEKLVLIGASVYAKGTGKLATLPAAVAYAGVNFLKSFPLRLYATQLTFKNISFSTSLDWTNVGRLHCLMPWWDDATVDFMTSGGYNVTSLIGKQLHCELPDAIIRQIPSCGHLPHLERPDFTNKLIVEFVQREAKKLSQCVAQV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00558 326 PRINTS Alpha/beta hydrolase fold signature 117 132 IPR000073 -
Cca06g00558 326 PRINTS Alpha/beta hydrolase fold signature 162 175 IPR000073 -
Cca06g00558 326 PRINTS Alpha/beta hydrolase fold signature 176 189 IPR000073 -
Cca06g00558 326 SUPERFAMILY alpha/beta-Hydrolases 91 314 IPR029058 -
Cca06g00558 326 PANTHER ALPHA/BETA FOLD HYDROLASE 276 326 - -
Cca06g00558 326 PANTHER ALPHA/BETA FOLD HYDROLASE 18 275 - -
Cca06g00558 326 PANTHER HYDROLASE 18 275 - -
Cca06g00558 326 PANTHER HYDROLASE 276 326 - -
Cca06g00558 326 PRINTS Epoxide hydrolase signature 97 115 IPR000639 GO:0003824
Cca06g00558 326 PRINTS Epoxide hydrolase signature 117 132 IPR000639 GO:0003824
Cca06g00558 326 PRINTS Epoxide hydrolase signature 176 189 IPR000639 GO:0003824
Cca06g00558 326 Pfam Serine aminopeptidase, S33 93 200 IPR022742 -
Cca06g00558 326 Gene3D alpha/beta hydrolase 84 321 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00558 Cca-Chr6 16619793 16627961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00558 92 220 Acyl Lipid Metabolism Gene Families AT3G10840 28.873 7.54e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00558 - - gmx:100792060 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00558 06 16619793 16627961 Cca06g00558 06 16619793 16627961 ECH