Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00551 ATGGCCAAAAAAGTTTCGTTTTTTCTTATTCCCCATAGAGCTTTCTCCTCCTCCACCCCTGAAAAGATCCCCACCCTTTACTCCTTCCTCCAGCCCTCAGTCTTTGCCCTCACCAAAAACCAGCCCCAACCCATTTCAGAACCCTCCCAAAAGGTCCCACCTTGCCTCTCCCCTGAGCAGCTTTCAACCTTGGAGAGCACCCTCCACAAGTCCCTCATAAGCAGCAACACTGATGAGGCATGGAGGTCCTTCAAGGCCCTCACTTCCCACCAAGCCTTCCCTCCCAAGCCACTCACAAACTCCCTCCTCACCCACCTCTCCTCCCTTGGTGACACCCTCAACCTCAAGAGGGCCTTTGCCTCTCTCCTCTTCCTCATGGAGAAGAACCCCTTGCTGCTCCACCATCACACCCTCAACCACATCATGCACTCCATGAGGAGTGCCAACACTGCTGCCCCTGCCTTTGCCCTTGTCAGGAGCATGTTCAGGAACAGGCTCTTTGTGCCCTTTCATGTCTGGGGCCCTGTGCTGGTTCAGATCAGCAGGAGCAATGGGAGCCTTGCTGCCTTCCTCAGGGTCTTTGAGGAGAATTGTAGGCTGGCTTTGGAGGAGGGGGTGGAGTTCATGAAGCCTGATGTTGGCGCTTGTAATGCGGCGCTGGAAGGTTGCTGCTGTGAGCTTGAGTCAGTGAGTGATGCTGAGAGGGTGGTTGGGATCATGGCGAAGCTCGGGGTGAGGCCTGATGAATCGAGTTTCGGGTTTCTTGGGTATTTGTATGCACTCAAGGGGTTACAGGAGAAGATACGTGAGTTGGAAGTTTTGATGGGTGGGTTTGGTTGTTTGAACAAGAAGGGTTTTTATTCTAATTTGATTAGTGGGTATGTTAAGTCAGGGGATTTAGCTTCTGTGGAGTCAACTATTGTTAGGTGTTTGAATGATGGAGGTGGGAAGGATTGGGGTTTTGGTGTTGAAACTTTCTGTCAAGTGGTTAACGCTTATTTTCAGAAAGGAAATATCAAGGGCTTGGCTAATTTGATTATTGAAGCTCAGAAGTTAGAGGGTTCAAGTATTGTGGTTGATAAGTCTATAGGTTATGGTATTGTTAATGCGTGTGTAAGCCTTGGAGTATCAGATAAAGCACACAGTATTCTTGATGAGATGAATGCTCTGGGGGCCTCTGTGGGTCTTGGGGTCTATGTGCCTATTCTGAAGGCTTACTGCAAAGACAATAGGACTGCTGAGGCTACTCAGTTGGTGATGGAGATTAGTAATTCGGGTCTTCAGTTGGATGTGGAGACCTATGATGCTTTGATAGAAGCTTCCATGTGCAGCCAAGATTTTCAGTCAGCGTTTTCCCTGTTTAGGGACATGAGAGAGGCAAGGATTCCTGACTTGAAAGGGAGTTACTTAACTATGATGACGGGTTTGATGGAGAATCATCGGCCTGAGTTGATGGCAGCTTTCTTGGATGAGGTGGTTGAGGATCCTAGGGTTGAAGTGGGTACTCATGATTGGAATTCTATCATCCATGCTTTCTGTAAAGCTGGGAGACTAGAAGATGCAAGAAGGACTTTCAGAAGGATGATGTTCCTACAATTTGAGCCAAATGATCAGACATACTTGTCCATGATTAATGGATATGTCTTGGCAGAGAAATATTTTCTCGTGTTGATGTTGTGGAATGAGGTTAAGCGAAAGCTATCAGTGGATGGGCAGAAGGGGATCAAGTTTGACCACAATCTAGTTGATGCTTTCTTGTATGCTATGGTCAAGGGAGGTTTCTTTGATGCTGCTATGCAAGTTGTGGAGAAAGCTAAGGAGATGAAAATATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACCCATAAAAAGCTCAAAGTGGCTAGGTTAAGGAAAAGAAATTTTAGAAAAATGGAAGCACTTATTGCTTTTAAAAATTGGGCTGGCTTGAATGCATGA 1968 0.4665 MAKKVSFFLIPHRAFSSSTPEKIPTLYSFLQPSVFALTKNQPQPISEPSQKVPPCLSPEQLSTLESTLHKSLISSNTDEAWRSFKALTSHQAFPPKPLTNSLLTHLSSLGDTLNLKRAFASLLFLMEKNPLLLHHHTLNHIMHSMRSANTAAPAFALVRSMFRNRLFVPFHVWGPVLVQISRSNGSLAAFLRVFEENCRLALEEGVEFMKPDVGACNAALEGCCCELESVSDAERVVGIMAKLGVRPDESSFGFLGYLYALKGLQEKIRELEVLMGGFGCLNKKGFYSNLISGYVKSGDLASVESTIVRCLNDGGGKDWGFGVETFCQVVNAYFQKGNIKGLANLIIEAQKLEGSSIVVDKSIGYGIVNACVSLGVSDKAHSILDEMNALGASVGLGVYVPILKAYCKDNRTAEATQLVMEISNSGLQLDVETYDALIEASMCSQDFQSAFSLFRDMREARIPDLKGSYLTMMTGLMENHRPELMAAFLDEVVEDPRVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMMFLQFEPNDQTYLSMINGYVLAEKYFLVLMLWNEVKRKLSVDGQKGIKFDHNLVDAFLYAMVKGGFFDAAMQVVEKAKEMKIFVDKWRYKQAFMETHKKLKVARLRKRNFRKMEALIAFKNWAGLNA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00551 655 Pfam Pentatricopeptide repeat domain 418 462 IPR002885 -
Cca06g00551 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Cca06g00551 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 247 IPR002885 -
Cca06g00551 655 TIGRFAM PPR: pentatricopeptide repeat domain 505 536 IPR002885 -
Cca06g00551 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Cca06g00551 655 Gene3D Tetratricopeptide repeat domain 464 631 IPR011990 GO:0005515
Cca06g00551 655 Pfam PPR repeat 287 305 IPR002885 -
Cca06g00551 655 PANTHER OS01G0788900 PROTEIN 3 655 - -
Cca06g00551 655 Pfam PPR repeat family 505 547 IPR002885 -
Cca06g00551 655 Gene3D Tetratricopeptide repeat domain 62 350 IPR011990 GO:0005515
Cca06g00551 655 Gene3D Tetratricopeptide repeat domain 351 463 IPR011990 GO:0005515
Cca06g00551 655 PANTHER BNAC05G43320D PROTEIN 3 655 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00551 262 566 Miscellaneous Gene Families AT4G11690 23.934 1.60e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00551 - - gmx:100811600 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00551 06 16507445 16510063 Cca06g00551 06 16507445 16510063 ECH