Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00547 ATGGAATATGGCAAATTGGGACCCTCCGACCCAGGTGGCTCCTCTCGCCGCTCCACCACTCCTCTCACCAAATCAGCCTCCACCTCTTCTTCCTCCAATAAAAAGCTCATAATGCTCTCTCTCCTCGCCGTTGTCTTAATCGTCGCTGCCGCCGTATCCGCCGCCATCGTCACCGTAGTCCGCTCCCACGCCTCCGGCAACCAAAATGGGCCGAACCTCGCCCGTAAACCCACACAGGCAATTTCCCGAACATGCAGCAAGACACGTTTCCCAACTCTATGCATCAACTCCCTCCTTGACTTCCCTGGCTCCACCACTGCCACGGAACAAGACCTCGTCCACATCTCATTCAACATGACCCTGCGCCATGTAAGCCGGGCGTTCTTCGCCTCCAGCGGACTCTCCTTCGCCGCCACGGAACCCAAGGTTCGCGCGGCATACGACGATTGTCTCGAGCTATTGGAGGAGTCGATGGACGCACTTACGCGGTCCCTCGACTCCGTCCTCTCGTCTTCGATGGTGCCCAGCAGCGGCGAGATCAGACCCGCTGCTGCTGGTTCTACCGAAGATGTGATGACGTGGCTGAGCGCCGCGCTCACTAATCAGGACACGTGTGCGGAGGGGTTCGACGACACGAGCGGGAGTGTGAAGGGGCAGATGGCTAATAACTTGAAGGACTTGTCCGAACTCGTGAGCAATTGTCTCGCGATATTTTCGGCGAGTGGAAGTGGCGATTTCTCGGGGGTGCCGATACAGAATAGGAGAAGATTAATGGAAAGAGAAGAAGATAGTGTTAACGGCGTTATCACGGAGAAATTCCCGAGATGGTTGAATAAACTAGATAGGAGACTGCTGAGTTTACCTGTGACGGCGATTCAGGCAGATATAACGGTGTCTAAGAATGGCGACGGAACAGTGAAGACAATTGCTGAGGCAATTAAGAAAGCACCAGATCATGGTACTCGCAGGTTCATCATTTATGTGAGGGCAGGAAGGTATGAGGAGAATAATTTAAAGGTGGGGAGAAAGAAAACGAATGTGATGTTCATAGGGGACGGGAAGGGCAAAACTGTAATTACAGGGAAAAAGAATGTGATAGATGGCATGACCACTTTCCACACTGCTTCGTTTGCTGCTAGTGGTGCTGGATTCATTGCACGAGACATCACCTTCGAGAACTATGCTGGACCGTCAAAACACCAAGCCGTGGCCCTCCGCGTCGGAGCTGACCACGCCGTGGTGTACCGGTGCAACATTGTGGGTTACCAAGACACTTGCTATGTGCACTCTAACCGTCAATTTTTCCGTGAATGTGACATTTATGGCACTGTGGACTTCATATTCGGCAATGCTGCCGTGGTTTTCCAAAAGTGCAACATTTATTCACGTAAGCCCATGGCCCAACAGAAGAACACAATCACGGCCCAAAATAGGAAAGACCCAAATCAGAATACGGGTATATCCATCCACAATTGTCGGATCCTACCCGCCCCGGATCTTGCCCCGGTTAAGGGCAGCATCCCCACCTATTTGGGTCGTCCATGGAAAATGTACTCTAGAACCGTATACTTGTTATCCTACATGGGTGACCACATAAGTCCTCGTGGTTGGTTGGAGTGGAATGGAGACTTTGCTTTGGACACATTGTATTATGGAGAGTACATGAATTATGGGCCGGGAGCAGCCGTGGGCCAACGGGTCAAATGGCCTGGGTACCGGGTCATCACGTCGAGGGTCGAGGCAAATCGGTTCACGGTGGCCCAGTTTATATCCGGGTCTGCCTGGTTACCATCCACCGGAGTGGCCTTCGCGGCCGGGTTATCCACATGA 1830 0.5262 MEYGKLGPSDPGGSSRRSTTPLTKSASTSSSSNKKLIMLSLLAVVLIVAAAVSAAIVTVVRSHASGNQNGPNLARKPTQAISRTCSKTRFPTLCINSLLDFPGSTTATEQDLVHISFNMTLRHVSRAFFASSGLSFAATEPKVRAAYDDCLELLEESMDALTRSLDSVLSSSMVPSSGEIRPAAAGSTEDVMTWLSAALTNQDTCAEGFDDTSGSVKGQMANNLKDLSELVSNCLAIFSASGSGDFSGVPIQNRRRLMEREEDSVNGVITEKFPRWLNKLDRRLLSLPVTAIQADITVSKNGDGTVKTIAEAIKKAPDHGTRRFIIYVRAGRYEENNLKVGRKKTNVMFIGDGKGKTVITGKKNVIDGMTTFHTASFAASGAGFIARDITFENYAGPSKHQAVALRVGADHAVVYRCNIVGYQDTCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNIYSRKPMAQQKNTITAQNRKDPNQNTGISIHNCRILPAPDLAPVKGSIPTYLGRPWKMYSRTVYLLSYMGDHISPRGWLEWNGDFALDTLYYGEYMNYGPGAAVGQRVKWPGYRVITSRVEANRFTVAQFISGSAWLPSTGVAFAAGLST 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00547 609 Pfam Pectinesterase 295 592 IPR000070 GO:0030599|GO:0042545
Cca06g00547 609 PANTHER PECTINESTERASE 25 607 - -
Cca06g00547 609 ProSitePatterns Pectinesterase signature 2. 440 449 IPR033131 -
Cca06g00547 609 SUPERFAMILY Pectin lyase-like 290 606 IPR011050 -
Cca06g00547 609 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 79 239 IPR035513 -
Cca06g00547 609 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 238 IPR006501 GO:0004857
Cca06g00547 609 CDD PMEI-like_3 85 240 - -
Cca06g00547 609 Gene3D Invertase/pectin methylesterase inhibitor family protein 78 241 IPR035513 -
Cca06g00547 609 MobiDBLite consensus disorder prediction 12 29 - -
Cca06g00547 609 SMART PMEI_2 76 237 IPR006501 GO:0004857
Cca06g00547 609 PANTHER PECTINESTERASE 25 607 - -
Cca06g00547 609 MobiDBLite consensus disorder prediction 1 29 - -
Cca06g00547 609 Pfam Plant invertase/pectin methylesterase inhibitor 80 237 IPR006501 GO:0004857
Cca06g00547 609 Gene3D - 289 607 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00547 Cca-Chr6 16434280 16438953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00547 1 608 Carbohydrate Esterase AT5G53370 64.648 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00547 - - gmx:106796002 1004.97