Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00546 ATGGATGACAGTATTAACAGCAATCACTGCCTCCACTATTATCATCACCAGAATCAGCATCAAAATCAGAGTGTGTGTGAGAAGATGGAGAAGCATCCGAGGGATTTGCTTGGAGGGTTTTCTATGGGTAGTGTTAGCGTGAGTGATGATAGCAATAGGCTTAATGTTAATGTTACTGCAATGAAACAAgaggaggaggaggatgatgatgaagaggttgagTTGAACCTTGGTCTCTCTTTGGGTGGGAGGTTTGGGGTGGATAAGAACCCGAAGAAGACAAAGCTTATGCGTTCTTCTTCTGTGGTGGGGACAATGCCTCTGTTTCGGGAGGACGACGCTGTGGCGCCGCCGCCTGCATCGTTTCCGGCGCTCATGAGGACCACCTCGCTGCCCACGGAGACGGAGGAAGAGTGGCGGCGGAGGAAGGAGATGCAGACCCTGCGCCGGATGGAGGCCAAGCGGCGGCGATCGGTGAAGCAGAGAGGCTCCCGGGAGGTTTCCGCCAGCAGCggtggcggagaggaggtggagggtggaggtgCACCAATGGGGTTGAGCAGGTACGGATTGGTGCCGCCACCGGCAGGTCTGATGTGGGGTCCGGCTGCGAAACAGGTTGTTCTTGGCGATGTGATGGGGAAAGGGAAAGGCTTTCAAGGGTTGTTTGGGCAGCCATGTTCTCAGGGCTCGGCGGATTCACAAGGGGGGAGCTCTTCATCGCTGTCTGAAATGGATAGCAAGGCTTTTTTAGGATCTGGATCTGGTAGTTGTGGTGAAGCAAGAAGCCCTGCTAGTAATCATTCAAAGCAAGAAAGAAGCAGTCAGGATCCTGTGGGTCCAGGGACAAAGGCAAATGAGAATGTGACCAGAACATCCAAAGCTGAGATGGAGAATCCATCTAAGAAACCTCATTCTTCCCAAAATATAATGAGGAGGGAAATTGGGACAAACACAATGGAGGACATGCCTTGTGTGTTTACAAAAGGTGATGGTCCTAATGGAAGAAGAGTTGAGGGAATATTGTACAAATATGGTAAAGGGGAGGAAGTGAGGATCATGTGTGTGTGCCATGGAAACTTCCTCTCTCCAGCTGAATTTGTAAAGCATGCCGGTGGTGGAGATGTTGCACACCCCCTTAGGCACATTGTTGTGAACCCTTCTGCTTCTCCCCTTTTGTGA 1182 0.4805 MDDSINSNHCLHYYHHQNQHQNQSVCEKMEKHPRDLLGGFSMGSVSVSDDSNRLNVNVTAMKQEEEEDDDEEVELNLGLSLGGRFGVDKNPKKTKLMRSSSVVGTMPLFREDDAVAPPPASFPALMRTTSLPTETEEEWRRRKEMQTLRRMEAKRRRSVKQRGSREVSASSGGGEEVEGGGAPMGLSRYGLVPPPAGLMWGPAAKQVVLGDVMGKGKGFQGLFGQPCSQGSADSQGGSSSSLSEMDSKAFLGSGSGSCGEARSPASNHSKQERSSQDPVGPGTKANENVTRTSKAEMENPSKKPHSSQNIMRREIGTNTMEDMPCVFTKGDGPNGRRVEGILYKYGKGEEVRIMCVCHGNFLSPAEFVKHAGGGDVAHPLRHIVVNPSASPLL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00546 393 Pfam Putative nuclear localisation signal 125 247 IPR032310 -
Cca06g00546 393 MobiDBLite consensus disorder prediction 226 250 - -
Cca06g00546 393 MobiDBLite consensus disorder prediction 226 310 - -
Cca06g00546 393 PANTHER AFP HOMOLOG 2 29 390 IPR031307 GO:0007165
Cca06g00546 393 PANTHER NINJA-FAMILY PROTEIN AFP1 29 390 - -
Cca06g00546 393 MobiDBLite consensus disorder prediction 149 182 - -
Cca06g00546 393 Pfam Tify domain binding domain 351 385 IPR032308 -
Cca06g00546 393 MobiDBLite consensus disorder prediction 259 295 - -
Cca06g00546 393 Pfam Ethylene-responsive binding factor-associated repression 68 104 IPR012463 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00546 Cca-Chr6 16402203 16406076 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00546 - - gmx:100776452 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00546 06 16402203 16406076 Cca06g00546 06 16402203 16406076 ECH