Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00545 ATGGAAAGCTGCACCAGCAACAGCAGTGGCAGCAACAATCACTGGAGAGCCGAGGAAGCCATTGGTGGCAACACTCAAGCTCTTCAGGCCCTTAGAGAACTCATCATATTTCCTCTTCACTTCTCTCACGAAGCACGGAAGCTTGGACTTAAGTGGCCAAGAGGATTGCTGCTGTATGGTCCACCAGGCACTGGAAAGACAAGTTTGGTACGAGCAGTTGTTCAGGAGTGTGGGGCGCATTTGACAATTATTAGTCCACACTCAGTTCATAGAGCACATGCTGGTGAAAGTGAAAGAATTCTCCGTGAGGCTTTTTCAGAGGCTTCATCTCATGTAGCCTTGGGCAAGTCATCAGTTATCTTCATAGATGAAATAGATGCACTCTGTGCTCGCCGAGATTCCAAAAGGGAGCAAGATGCCCGAGTTGCTTCCCAACTCTTTACACTGATGGACTCAAATAAACCAACCTTTTCTACACCAGGTGTAGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCACTAAGAAGGTCTGGACGTTTTGATGCTGAAATTGAAGTTACTGTCCCAAATGAAGAGGAGCGTTTTCAAATTCTGAAGTTGTATACAAAGACGATTCCCTTGGATCCTAGTCTTGATTTGAAGTCTATTGCTGCATCGTGCAATGGATATGTTGGAGCCGATTTGGAGGCTTTGTGTCGTGAAGCTACCATGTTTGCAATTAAAAGATCCTCAAATGCAAAGGAAGATGCTAGTAATTTCAGTCTAATGATGGAGGATTGGAAGAATGCAAGGTCTGTTGTTGGTCCAAGTATAACAAGAGGTGTTACTGTGGAAATTCCCAAAGTGACTTGGGAAGATATTGGTGGATTAAAAGAATTGAAGAAAAAGCTCCAACAAGCCGTCGAATGGCCTATTAAGCATTCTGGTGCATTTTCAAGATTGGGAATATCCCCTGTACGTGGAATTCTTCTCCACGGGCCTCCAGGATGTTCCAAAACTACCCTTGCCAAAGCTGCTGCCCATGCTGCCCAAGCTTCCTTCTTTTCCTTAAGTGGTGCAGAATTGTATTCGATGTATGTTGGAGAGGGGGAAGCTTTGCTCCGTAAAACATTTCAGAGAGCACGCCTTGCGGCACCCAGTATAATATTCTTTGACGAGGCTGACGTGGTAGCTGCCAAACGGGGTGACAGTTCAAGCAATTCTGCTACAGTTGGAGAGAGACTTTTATCCACTCTGCTGACTGAGATTGATGGCTTAGAAGAAGCTAAAGGAATTCTTGTTTTGGCAGCTACAAATCGCCCCTATGCAATTGATGCTGCACTTATGCGTCCTGGGCGTTTTGATCTGGTTCTATATGTACCACCACCTGATTTGGAGGCTCGGTATGAGATACTTTGTGTACATACACTTAAGATGAAAACAGGGCATGATGTTGATCTCAGAAGGCTAGCAGAAGACACAGAGCTCTTCACAGGTGCTGAACTGGAGGGATTATGCAAGGAAGCTGGAATTGTAGCTCTAAGGGAAGACATATCTGCCACTGTTGTTTGTGACCGCCATTTCCAGATTGCGAAGAATTCTTTAAAACCCGCATTAACGAAAGCAGAAATTGATTCATATTCATCTTTCATGAAGACCTCATCTAGAGCTTTGCCTAGCCACCTTGAAGCAGCCGCCGCTGTTGGCGTGCACAAACGCAAGGCCTCCGCCCCGCACCCGCCGCTGTTGGCGCGCGCCACCGCAAGGCCTCCGCTGTTCGCACAACCGCAACTCCGAAGTCCGTCTGCAATCGAAATCGCACTTCCACTGTCCGCGAGTTGTAACTTTTTGCAGGTTTTGACCCTGGAAGCAAGAAAACACAAGTGTGGTTATAATTTCAAGTTCCTTCACTGTGTTGTGCCAAAAAGAGTTCTGTGTTGCTTCCTTTGTGCATCAATTGTAGCTACCATGCCTTCAGTGCATCGGGGAAACTTCTCCAATCGCCAAACCCAATTCTCTGCACGGAGGCAGAAGATTATACAACAGAGGAAGTCTCTTCCGCTTGCTTCAGGACTGTATCTAATTGAGAAAAGACTGGCTGAAGAGGTTCGGAAGAACGATGTGTTGATTATTGTTGGTGAAACTGGAAGTGGAAAGACCACTCAGATTCCACAGTTTCTGTTTGATGCTGGGTTTTGCCGCGATGGAAGGGTTATTGGGATAACGCAACCTCGACGTGTAGCTGCTGTCACTGTGGCCAAACGAGTTGCTGAGGAATGTGGTGTTGAGTTGGGCCAGAAGGTCGGGTATTCTGTTAGATTTGATGATGCTACCTCCGGGTCAACTAGGATCAAATATATGACAGATGGGTTGCTTTTGAGGGAAGCATTATTGGATCCTTATCTTTCTAAGTATTCTGTTATTATTGTTGATGAAGCACATGAGAGGACTGTTCACACTGATGTCTTGATGGGGTTGCTAAAAAGTGTACAACTTGCTCGGTCAAGTTCTGTCAGTGATGGTCGAGGCCTAAATTTTGGAAACAAGAATGTGAATAATGTCATGTTGGAGAAAGAAAATGATCAGAGTGGTAGTTTTCTTAAAAAGCCCCGCCATGAGAAGTATGCTCCATTGAAGTTAATCATCATGTCTGCTAGTCTTGATGCACGTGCTTTCTCTGAGTACTTTGGTGGTGCCAAAGCCGTTCACATCCAAGGGAGACAGTTTCCTGTAGATATATTTTATACTCTCCATGCAGAGACAGATTATGTAGATGCTTCTTTGATAACAATATTCCAGATTCATTTAGACGAGGGCCCTGGTGATATACTAGTATTTCTTACTGGGCAAGAAGAGATTGAATCTGTTGAAAGGCTTATCAATGAAAAACTCCCACAATTACCTCAAGAAAATCAGAAGCTTCTAGTTGTGCCTATATTTGCAGCTCTTCCATCTGAGCAGCAAATGCGTGTCTTTGCACCAGCTTCATCTGGGTTTCGAAAGGTTATATTGGCAACTAATATTGCTGAGACATCAGTAACAATTCCTGGAATCAAATATGTAATTGATCCTGGATTTGTTAAAGCACGTTCCTATGACCCTGGAAAAGGCATGGAATCCTTGATTATAGTACCTACATCGAAGTCACAAGCTCTGCAAAGAAGTGGGCGTGCAGGGCGTGAAGGACCTGGAAAATGCTTCCGCTTATATCCAGAAAAAGAATTTGAGAAACTCGAGGATTCAACATTGCCAGAGATTAAGCGGTGCAACCTTTCTAATGTCATTTTGCAACTTAAGGCTTTGGGTGTTGATGACATTCTAGGGTTCGATTTCATTGAGAAACCTCCAAGGGCAGCTATTCTAAAATCATTCGAGCAGCTATTATTGTTAGGTGCCCTAACAGATGAATGTCAACTATCTGATCCCGTTGGGCATCAAATGGCTCGACTGCCCTTGGATCCTGTTTATTCCAAAGCTCTTATTTTAGCTAGTCAGTTTAACTGCTTGGAGGAGATGTTGATAACTGTAGCACTGCTTTCTGTGGAATCCATATTTTATAGTCCTCGTGACAAGTTAGAAGAGGCAAGAACTGCAATGAAATGCTTCTCAAGTTCAGAGGGAGACCACATCACTTTGATTAATGTGTATAGAGCATCTAATGATTTCTTGGAGAAGAGATCAATGGAAATGAGTACAGCAAAGTGTGAAAAGGTTTATAGAAAATGGTGCAAGGAAAACTTTATTAATAGCCGGTCTCTTAGACATGCTCGTGACATTCACAGGCAGATTCAGGGACATGTTCAACAAATGGGTCTGAATCTTTCATCTTGTGGAGATGATATGCTTCAATTTCGCAGATGCCTTGCTGCTTCCTTTTTCCTCAATGCAGCTGTAAAGCAACCAGAGGGGACATACAGGGCTTTGGCAAATCACGACACATGTTTAGCTTCTTGTGACATGAtctctctctctctgtctctcCAAGTTGGCAAGCAAAAGGGTTATTTATCTGTTGGAACAGATCGGTGCAATCTTCAGATATTGTCTGGGCCACTGGTTCATGGATCTTATCATAATGACATCTTTTTAGGGGGTTTGGCTTTGGCATTTGGTAACCATTGGACCCCTGGGATGTGGAGATGCCACTAA 4140 0.4384 MESCTSNSSGSNNHWRAEEAIGGNTQALQALRELIIFPLHFSHEARKLGLKWPRGLLLYGPPGTGKTSLVRAVVQECGAHLTIISPHSVHRAHAGESERILREAFSEASSHVALGKSSVIFIDEIDALCARRDSKREQDARVASQLFTLMDSNKPTFSTPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEERFQILKLYTKTIPLDPSLDLKSIAASCNGYVGADLEALCREATMFAIKRSSNAKEDASNFSLMMEDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSGAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRKTFQRARLAAPSIIFFDEADVVAAKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARYEILCVHTLKMKTGHDVDLRRLAEDTELFTGAELEGLCKEAGIVALREDISATVVCDRHFQIAKNSLKPALTKAEIDSYSSFMKTSSRALPSHLEAAAAVGVHKRKASAPHPPLLARATARPPLFAQPQLRSPSAIEIALPLSASCNFLQVLTLEARKHKCGYNFKFLHCVVPKRVLCCFLCASIVATMPSVHRGNFSNRQTQFSARRQKIIQQRKSLPLASGLYLIEKRLAEEVRKNDVLIIVGETGSGKTTQIPQFLFDAGFCRDGRVIGITQPRRVAAVTVAKRVAEECGVELGQKVGYSVRFDDATSGSTRIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTVHTDVLMGLLKSVQLARSSSVSDGRGLNFGNKNVNNVMLEKENDQSGSFLKKPRHEKYAPLKLIIMSASLDARAFSEYFGGAKAVHIQGRQFPVDIFYTLHAETDYVDASLITIFQIHLDEGPGDILVFLTGQEEIESVERLINEKLPQLPQENQKLLVVPIFAALPSEQQMRVFAPASSGFRKVILATNIAETSVTIPGIKYVIDPGFVKARSYDPGKGMESLIIVPTSKSQALQRSGRAGREGPGKCFRLYPEKEFEKLEDSTLPEIKRCNLSNVILQLKALGVDDILGFDFIEKPPRAAILKSFEQLLLLGALTDECQLSDPVGHQMARLPLDPVYSKALILASQFNCLEEMLITVALLSVESIFYSPRDKLEEARTAMKCFSSSEGDHITLINVYRASNDFLEKRSMEMSTAKCEKVYRKWCKENFINSRSLRHARDIHRQIQGHVQQMGLNLSSCGDDMLQFRRCLAASFFLNAAVKQPEGTYRALANHDTCLASCDMISLSLSLQVGKQKGYLSVGTDRCNLQILSGPLVHGSYHNDIFLGGLALAFGNHWTPGMWRCH 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00545 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 545 IPR027417 -
Cca06g00545 1379 PANTHER BNAA08G19730D PROTEIN 663 1307 - -
Cca06g00545 1379 ProSitePatterns AAA-protein family signature. 429 447 IPR003960 GO:0005524|GO:0016887
Cca06g00545 1379 CDD AAA 22 190 - -
Cca06g00545 1379 Gene3D - 1106 1211 - -
Cca06g00545 1379 Pfam Helicase associated domain (HA2) 1121 1244 IPR007502 GO:0004386
Cca06g00545 1379 SMART helicmild6 951 1059 IPR001650 -
Cca06g00545 1379 SMART ultradead3 685 911 IPR014001 -
Cca06g00545 1379 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 803 812 IPR002464 -
Cca06g00545 1379 Gene3D - 461 552 - -
Cca06g00545 1379 Gene3D - 194 275 - -
Cca06g00545 1379 SMART AAA_5 702 939 IPR003593 -
Cca06g00545 1379 SMART AAA_5 52 194 IPR003593 -
Cca06g00545 1379 SMART AAA_5 322 461 IPR003593 -
Cca06g00545 1379 SMART ha2_5 1119 1210 IPR007502 GO:0004386
Cca06g00545 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 247 IPR027417 -
Cca06g00545 1379 Pfam Helicase conserved C-terminal domain 932 1058 IPR001650 -
Cca06g00545 1379 Gene3D - 276 460 IPR027417 -
Cca06g00545 1379 Gene3D - 8 193 IPR027417 -
Cca06g00545 1379 CDD DEXHc_DHX33 683 901 - -
Cca06g00545 1379 Pfam ATPase family associated with various cellular activities (AAA) 56 190 IPR003959 GO:0005524|GO:0016887
Cca06g00545 1379 Pfam ATPase family associated with various cellular activities (AAA) 326 458 IPR003959 GO:0005524|GO:0016887
Cca06g00545 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 695 1248 IPR027417 -
Cca06g00545 1379 Gene3D - 653 904 IPR027417 -
Cca06g00545 1379 Pfam AAA+ lid domain 215 251 IPR041569 -
Cca06g00545 1379 Pfam AAA+ lid domain 481 526 IPR041569 -
Cca06g00545 1379 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 697 902 IPR014001 -
Cca06g00545 1379 CDD AAA 292 459 - -
Cca06g00545 1379 CDD SF2_C_RHA 906 1067 - -
Cca06g00545 1379 Gene3D - 905 1078 IPR027417 -
Cca06g00545 1379 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 925 1099 IPR001650 -
Cca06g00545 1379 PANTHER ATP-DEPENDENT RNA HELICASE 663 1307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00545 Cca-Chr6 16358855 16378948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00545 251 553 Calmodulin-binding Proteins AT3G56690 44.884 2.97e-76 273