Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00539 ATGGCAATGGCAAGACGCATGATTACGAGGATGAGGAATACGGTTGGTGCTGTTCTTCTACCACACGCTCCATCAACAACTCATTCACACTCCTTCCATTTTTATAACCATTCTCTCTCTCCATCAAAATCCCATTTTTTCTCATACTCCTCTACCTTCCTTCGCTCCTTCTCTCACCATTTACCAGGTGAGAAAAGTGATGAAGGTGCAACCACGGATGGATGGGAAGAGGAAGATGAGACTGAACCTAAGATTGGTGATGGGGGCGATGGTGGTGGAGTTGCCTTGCAAAATGTTCCTTGGGGTCAGCGAGCTCTCTCTATTGCTGAGGAGGTGCTTACACAGTTCAGTGAGGACATCAAACTATTTGCTTTTAAGACAACTCCTCGTGGATATGTTTATGTGAGATTGGACAAATTAACTGGCGAATATGGGTGTCCAAGCGTGGAAGAGCTTGAATGCTATAATAAAGAGTACAAGAAAAGATTAGATGAAGTTGGAGCACTCGGGGAGATACCTGATGATTTGGCTCTAGAGGTTTCATCCCCAGGTGCTGAGAGGCTACTAAAAGTGCCAGATGATATTAGTCGATTCAAAGAAATGCCTATGAGAGTCTACTACACAGAAAATATGGAGTCCAATTGCCCAGAAAGGGATGGAGTTTTCTTGTTAGATTCTATAGAAAAAGATTCAGAGATTTGTGTGTGGAAGATGGCAAACGTTAAAGAGAATAGAGACCCCCTTAGAAAAGGCAGACCCTTAAGTCGTAAACAGAAGGATTGGAGATTAAAACTGCCATTTAACTTGCATAGAATGGTAACCCTTTACCTTGAATATTTGTAA 843 0.4247 MAMARRMITRMRNTVGAVLLPHAPSTTHSHSFHFYNHSLSPSKSHFFSYSSTFLRSFSHHLPGEKSDEGATTDGWEEEDETEPKIGDGGDGGGVALQNVPWGQRALSIAEEVLTQFSEDIKLFAFKTTPRGYVYVRLDKLTGEYGCPSVEELECYNKEYKKRLDEVGALGEIPDDLALEVSSPGAERLLKVPDDISRFKEMPMRVYYTENMESNCPERDGVFLLDSIEKDSEICVWKMANVKENRDPLRKGRPLSRKQKDWRLKLPFNLHRMVTLYLEYL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00539 280 MobiDBLite consensus disorder prediction 64 93 - -
Cca06g00539 280 Hamap Ribosome maturation factor RimP [rimP]. 103 279 IPR003728 GO:0042274
Cca06g00539 280 PANTHER OS01G0594650 PROTEIN 24 279 - -
Cca06g00539 280 PANTHER OSJNBA0006B20.18 PROTEIN 24 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00539 Cca-Chr6 16169242 16174747 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00539 - - gmx:100806065 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00539 06 16169242 16174747 Cca06g00539 06 16169242 16174747 ECH