Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00536 ATGGCACGCATTTCCCGCCTCTATGCCCTCTGCTCCTCCACCTCGCTGTCGCCTGCCTCCGCTTCGCTGTCGCCGGCGTCATCCCTCATCGGCGGCGCATTCCAGCTGCGACACATCTCCGGGGGGAACATGGCGCGCGCGAAGGCGGCGGCGGCGGACAAGGAGCCGTGGTGGAAGGATTCCATGGAGCGGCTTCGCAACATCGGGATCTCGGCGCACATCGACTCCGGGAAGACGACGCTGACGGAGCGGATTCTGTACTACACGGGTCGGATCCACGAGATCCACGAGGTGAGGGGCAGGGACGGCGTTGGCGCCAAGATGGATTCCATGGACTTGGAGAGGGAGAAGGGAATCACCATTCAGTCTGCTTCCACCTACTGCTCTTGGAAGGACTATAAGATGAGTATTTTGAAGTATCTGGGGACGCCCAGGCATAAGCTTTTTGCTGCCAGAAAGTATCTTAACGCACTGGGTTTTTCCTCTTTTCACACATCTCTAAATTCCTGTGTGGAACTTCACGCCCAAGATGAGGAAGTAGTGATTGCTTTGGGAAGTAATGTAGGTGACAGACTGCATAACTTCAAGGAAGCTCTGAAATTGATGAGGAGTTCAGGCATTAACATCACAAGACATGCTTGTTTGTATGAGACAGCACCAGCATATGTTACTGATCAACCTCGCTTTATCAATTCTGCAATTAGAGGTGTTACTAAACTCGGTCCACATGAATTATTGTCAACACTCAAAAGAATTGAGAGGGATTTGGGCCGTACAGATGGTATAAGGCCATTCTGGTGGACTCTCTGGATTGTGGGAAGATTTAGGTAG 831 0.5211 MARISRLYALCSSTSLSPASASLSPASSLIGGAFQLRHISGGNMARAKAAAADKEPWWKDSMERLRNIGISAHIDSGKTTLTERILYYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSASTYCSWKDYKMSILKYLGTPRHKLFAARKYLNALGFSSFHTSLNSCVELHAQDEEVVIALGSNVGDRLHNFKEALKLMRSSGINITRHACLYETAPAYVTDQPRFINSAIRGVTKLGPHELLSTLKRIERDLGRTDGIRPFWWTLWIVGRFR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00536 276 Gene3D - 177 268 IPR035907 -
Cca06g00536 276 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 109 124 IPR031157 -
Cca06g00536 276 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 63 138 IPR000795 GO:0003924|GO:0005525
Cca06g00536 276 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 4 146 IPR045044 -
Cca06g00536 276 Gene3D - 52 157 IPR027417 -
Cca06g00536 276 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 4 146 - -
Cca06g00536 276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 138 IPR027417 -
Cca06g00536 276 CDD HPPK 180 263 IPR000550 GO:0003848|GO:0009396
Cca06g00536 276 SUPERFAMILY 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 180 263 IPR035907 -
Cca06g00536 276 Pfam Elongation factor Tu GTP binding domain 64 138 IPR000795 GO:0003924|GO:0005525
Cca06g00536 276 PRINTS GTP-binding elongation factor signature 67 80 IPR000795 GO:0003924|GO:0005525
Cca06g00536 276 PRINTS GTP-binding elongation factor signature 116 124 IPR000795 GO:0003924|GO:0005525
Cca06g00536 276 Pfam 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 181 260 IPR000550 GO:0003848|GO:0009396
Cca06g00536 276 TIGRFAM folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 180 260 IPR000550 GO:0003848|GO:0009396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00536 Cca-Chr6 16097789 16099963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00536 53 149 Eukaryotic Initiation Factors Gene Family AT5G10630 34.579 6.07e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00536 K02355 K13941 gmx:100808899 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00536 06 16097789 16099963 Cca06g00536 06 16097789 16099963 ECH