Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00533 ATGGCGATGATGCAAGGTGTGCAGAAGAACACGCTTTACGTGGGAGGGTTAGCGGAGGAGGTGAACGAGTCGATCCTCCACGCGGCGTTCATTCCGTTCGGCGACATCAAGGACGTGAAGACGCCGTTGGACCAGGCCACGCAGAAGCACCGCTCCTTCGGCTTCGTCACCTTCCTCGAGCGAGACGACGCCGCCTCCGCCATGGACAACATGGACGGCGCCGAGCTCTACGGCCGCGTCCTCACCGTCAACTACGCCCTCCCCGAACGCATCAAGGGCGGCGAGCAGGGCTGGGCAGCACAACCTATTTGGGCGGATGCGGATACCTGGTTTGAGCGGCAGCAGCAGGAGGAGGAGATGCGGCGGATTGAGGCGGAGAATAGGGCGGCGATGCAGGCGGCGGAGGACTTGCACCGGAAGCAGGTGGCGGAGCAGCGGGAGGGGGAGAAAGAAGAGGAAGTTGAGATCCGTGATGATCCCATGGCGCAGGCTGAAGCAGAGGTTCTTCAACAGAGCAATCAATGA 525 0.619 MAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLERDDAASAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDLHRKQVAEQREGEKEEEVEIRDDPMAQAEAEVLQQSNQ 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00533 174 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 5 172 - -
Cca06g00533 174 Coils Coil 113 140 - -
Cca06g00533 174 Gene3D - 3 153 IPR012677 -
Cca06g00533 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Cca06g00533 174 MobiDBLite consensus disorder prediction 126 174 - -
Cca06g00533 174 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Cca06g00533 174 CDD RRM_PPIE 12 84 IPR034168 GO:0003723
Cca06g00533 174 MobiDBLite consensus disorder prediction 126 162 - -
Cca06g00533 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Cca06g00533 174 SMART rrm1_1 11 84 IPR000504 GO:0003723
Cca06g00533 174 PANTHER TRANSFORMER-2-RELATED 5 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00533 Cca-Chr6 16079207 16080334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00533 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 36.709 1.13e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00533 - K09564 ccaj:109797476 320.857