Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00526 ATGCTCACCTCGAGGCAAtccttgtacatctcttcctcttctccttcttcttcattgttttgtatcattctcctCCAACTCACACTTCTCTATGGCCTTGCCTTTTCTTCCAACCATGAAGCCTCAACTCTCTTCTCTTGGCTCCATGCTTCTTCTTCTGCATCACCACCCCCTCCATCTTTCTCCAACTGGAACATCCTTGATCCCAATCCATGCAACTGGACATGCATAACATGCTCCTCACTAGCCTTTGTCACTGAAATCAACATACAATCCATCCCTCTTGAGCTTCCCTTACCCTCCAACCTCTCTTCATTTCACTCTCTTCAAAAGCTTGTCATATCTGATGCCAATCTCACTGGAACCATCCCTTCAGACATTGGTGATTGCTCTTCCCTTACTGTCATTGATCTCAGCTCCAACAACCTTATTGGCTCTATTCCTTCAAGCATTGGCAAGCTCCACAACCTTCAGAACTTGTCCTTGAACTCCAACCAGCTCAGTGGAAGGATTCCAGCCGAGTTAAGCAATTGCATTGGCCTAAAAAATCTACTCCTTTTTGATAACCAAATTAGTGGGAGTATCCCACCTGAACTGGGGAAGCTGTCACAACTTGAGTCACTAAGAGCAGGAGGGAACAAAGATATAGTTGGTAAGATTCCTGAAGAGCTTGGAGAATGCAGAAACTTGACTGTGTTGGGTCTGGCTGATACAAGAATATCGGGTTCTTTGCCTGCTTCTTTGGGTAGGCTTAGCAAGCTTCAGACACTTTCCATTTATACTACCATGCTCTCTGGTGAGATTCCACATGAGTTAGGTAACTGTTCTGAACTCGTGGACTTGTTTCTATATGAAAATAGCCTATCAGGGTCAATTCCATCTGAGCTTGGTAAGCTCAAGAAGCTGGAACAGTTGTTTTTATGGCAGAATGGTCTTGTGGGTGCTATCCCAGAAGAGATTGGTAACTGCACAAGTTTGAGAAAAATTGATTTCTCTCTAAATTCTCTGTCTGGGACTATTCCTTTGTCTTTGGGAGGTCTTTTGAAGCTCGAAGAGTTTATGATTAGTGATAACAATGTGTCTGGTTCAATCCCTTCTAGTCTTTCAAATGCTAAAAACCTCCAACAGTTGCAAGTTGACACAAATCAGCTCTCAGGCTTGATTCCACCAGAGCTTGGTGAGTTGTCAAACCTCATGGTGTTCTTTGCTTGGCAGAACCAACTTGAGGGAAGCATTCCCTCCACTTTGGGGAACTGCAGCAACCTTCAAGCACTAGACTTGTCGCGGAATGCACTCACTGGTGGTATTCCTGATGCCATATTCCAGCTCCAAAACCTCACAAAATTGCTTCTGATTTCCAATGACATATCAGGTTTCATACCAAATGCAATAGGCAGTTGCAGCTCTCTGATAAGGTTGAGGCTTGGAATCAATAGGATCACTGGTAGCATTCCCAAAACAATAGGCAACCTCAAGAGCTTGAACTTCTTAGACCTTTCTTCGAACCGCCTTGCTGGTCTGGTGCCTGATGAGATTGGAAGCTGCACTGAACTGCAAATGATAGATTTAAGCAGTAACAACTTAGAAGGCCCTTTGCCTAATACCTTGTCTTCACTGTCTGCAGTTCAGGTATTGGATGCATCTTCCAACAAGTTTTCAGGTCCTATACCAGCAAGTTTAGGTCGTCTTGTTTCTCTGAGTAAGCTGATCCTAAGCAATAACTTGTTTTCTGGACCTATTCCTGCATCACTGAGCTTATGTTCAAATTTACAACTGCTTGATCTTAGTAGCAACAAGCTCAGTGGAAGCATACCGGTCGAGTTAGGCCGCATTGAGTCACTAGAAATTGCTCTCAATCTTAGTTGTAATTCACTCGGTGGAACAATCCCAACTCAGATATCAGCTCTTAACAAGCTTTCCATTTTGGACCTCTCACACAACCAGTTGGAAGGAGATTTGCAGCCTCTTTCAGTGTTAGACAACCTTGTTTCCCTCAATGTTTCTTACAACAAATTTTCTGGCTGTCTTCCAGATAACAAGCTTTTCAGGCAGTTATCATCAAAAGACTTCACTGCAAATCAAGGGCTGTCATGCTTTGTGAAGGATTCTGGCAAGGCAGGTGTGGCATTGAATGGAAATGATGTAAGGAAATCGCGAAGGCTTAAGCTAGCCATTGGATTGTTGATAGCCTTGACAGTAATAATGACTGTTATGGGGATAACTGCTGTGATCAAAGCAAGGAGAACCATTAGAGATGATGATTCCGAGTTGGGGGACTCATGGACTTGGCAATTCATACCATTCCAAAAGCTAAACTTTTCAGTGGAACAAGTAATGAGATGTTTGATTGATAGAAACATAATTGGCAAGGGATGTTCTGGTGTTGTTTATAGAGCTGAAATGGATAATGGTGAAGTCATTGCTGTGAAGAAACTGTGGCCTACAACTATTGATGATGGAGAGGCATTTAAGGAAGAAAAAAGTGGAGTTCGTGACTCATTCTCAGCTGAGGTTAAGGCCCTTGGCTCAATACGTCATAAGAACATTGTCAGATTCTTGGGGTGCTGTTGGAACAGGAAAACAAGATTGCTTATTTTTGATTATATGCCGAATGGAAGTTTGAGTAACCTACTTCATGAGAGAAGTGGAAATTCTCTGGAATGGGAACTTAGGTACAGAATCTTGTTAGGTGCTGCAGAAGGACTTGCATATCTACATCATGACTGTGCCCCTCCTATAGTTCACAGAGATATTAAAGCCAATAACATCCTCATTGGTCTTGAATTTGAGCCTTACATTGCTGACTTTGGCTTGGCTAAACTTGTTGATGATGGTGATTTTGGTCGTTCTTCCAATACAGTTGCTGGTTCCTATGGATATATTGCTCCAGAATATGGCTATATGATGAAGATCACAGAGAAGAGTGACGTTTATAGCTATGGTGTAGTTTTGTTAGAAGTCTTGACAGGTAAGCAACCAATTGATCCAACCATACCAGATGGTCTACATGTTGTTGATTGGGTGAGAAAGAAAAAGGGTCTTGAAGTGCTTGATTCAAGCTTACTCTCTAGACCAGAATCAGAAATAGAGGAAATGATGCAGGCATTGGGAATAGCTTTATTGTGTGTGAATTCATCCCCTGATGAAAGGCCAACAATGAGAGATATTGCTGCAATGCTCAAGGAGATAAAGCATGAAAGGGAGGAATATGCAAAATTTGATGTGCTTCTAAAAGGCTCTCCTGCAAATGGTTCATGTGGGAATAAAAGCTTTGGTGGAGTTGTGCCAACATCTTCTTCATCAGTACCAATCATGCAAACTTTGAAATCAAAAAGCAATAACTCAAGTTTCTCTGTGTCTTCACTGCTTCTTTCATCTTCAAGTGTCAAGTTGGGTTCCAAATGA 3405 0.4156 MLTSRQSLYISSSSPSSSLFCIILLQLTLLYGLAFSSNHEASTLFSWLHASSSASPPPPSFSNWNILDPNPCNWTCITCSSLAFVTEINIQSIPLELPLPSNLSSFHSLQKLVISDANLTGTIPSDIGDCSSLTVIDLSSNNLIGSIPSSIGKLHNLQNLSLNSNQLSGRIPAELSNCIGLKNLLLFDNQISGSIPPELGKLSQLESLRAGGNKDIVGKIPEELGECRNLTVLGLADTRISGSLPASLGRLSKLQTLSIYTTMLSGEIPHELGNCSELVDLFLYENSLSGSIPSELGKLKKLEQLFLWQNGLVGAIPEEIGNCTSLRKIDFSLNSLSGTIPLSLGGLLKLEEFMISDNNVSGSIPSSLSNAKNLQQLQVDTNQLSGLIPPELGELSNLMVFFAWQNQLEGSIPSTLGNCSNLQALDLSRNALTGGIPDAIFQLQNLTKLLLISNDISGFIPNAIGSCSSLIRLRLGINRITGSIPKTIGNLKSLNFLDLSSNRLAGLVPDEIGSCTELQMIDLSSNNLEGPLPNTLSSLSAVQVLDASSNKFSGPIPASLGRLVSLSKLILSNNLFSGPIPASLSLCSNLQLLDLSSNKLSGSIPVELGRIESLEIALNLSCNSLGGTIPTQISALNKLSILDLSHNQLEGDLQPLSVLDNLVSLNVSYNKFSGCLPDNKLFRQLSSKDFTANQGLSCFVKDSGKAGVALNGNDVRKSRRLKLAIGLLIALTVIMTVMGITAVIKARRTIRDDDSELGDSWTWQFIPFQKLNFSVEQVMRCLIDRNIIGKGCSGVVYRAEMDNGEVIAVKKLWPTTIDDGEAFKEEKSGVRDSFSAEVKALGSIRHKNIVRFLGCCWNRKTRLLIFDYMPNGSLSNLLHERSGNSLEWELRYRILLGAAEGLAYLHHDCAPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHVVDWVRKKKGLEVLDSSLLSRPESEIEEMMQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSPANGSCGNKSFGGVVPTSSSSVPIMQTLKSKSNNSSFSVSSLLLSSSSVKLGSK 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00526 1134 Gene3D Ribonuclease Inhibitor 40 151 IPR032675 -
Cca06g00526 1134 SUPERFAMILY L domain-like 388 694 - -
Cca06g00526 1134 Gene3D Phosphorylase Kinase; domain 1 766 868 - -
Cca06g00526 1134 SUPERFAMILY Protein kinase-like (PK-like) 760 1061 IPR011009 -
Cca06g00526 1134 PRINTS Leucine-rich repeat signature 494 507 - -
Cca06g00526 1134 PRINTS Leucine-rich repeat signature 636 649 - -
Cca06g00526 1134 Gene3D Transferase(Phosphotransferase) domain 1 869 1078 - -
Cca06g00526 1134 SMART LRR_typ_2 563 587 IPR003591 -
Cca06g00526 1134 SMART LRR_typ_2 588 611 IPR003591 -
Cca06g00526 1134 SMART LRR_typ_2 419 443 IPR003591 -
Cca06g00526 1134 SMART LRR_typ_2 299 323 IPR003591 -
Cca06g00526 1134 SMART LRR_typ_2 636 655 IPR003591 -
Cca06g00526 1134 SMART LRR_typ_2 154 178 IPR003591 -
Cca06g00526 1134 SMART LRR_typ_2 491 514 IPR003591 -
Cca06g00526 1134 SMART LRR_typ_2 659 684 IPR003591 -
Cca06g00526 1134 Gene3D Ribonuclease Inhibitor 532 616 IPR032675 -
Cca06g00526 1134 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 19 1127 - -
Cca06g00526 1134 SMART serkin_6 782 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00526 1134 Gene3D Ribonuclease Inhibitor 152 241 IPR032675 -
Cca06g00526 1134 ProSiteProfiles Leucine-rich repeat profile. 638 660 IPR001611 GO:0005515
Cca06g00526 1134 Pfam Leucine rich repeat N-terminal domain 39 80 IPR013210 -
Cca06g00526 1134 Pfam Protein tyrosine and serine/threonine kinase 786 1059 IPR001245 GO:0004672|GO:0006468
Cca06g00526 1134 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 1127 - -
Cca06g00526 1134 ProSiteProfiles Protein kinase domain profile. 782 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca06g00526 1134 ProSitePatterns Protein kinases ATP-binding region signature. 788 811 IPR017441 GO:0005524
Cca06g00526 1134 SMART LRR_sd22_2 299 322 - -
Cca06g00526 1134 SMART LRR_sd22_2 587 608 - -
Cca06g00526 1134 SMART LRR_sd22_2 154 177 - -
Cca06g00526 1134 SMART LRR_sd22_2 636 664 - -
Cca06g00526 1134 SMART LRR_sd22_2 515 541 - -
Cca06g00526 1134 Pfam Leucine rich repeat 397 456 IPR001611 GO:0005515
Cca06g00526 1134 Pfam Leucine rich repeat 469 528 IPR001611 GO:0005515
Cca06g00526 1134 Pfam Leucine rich repeat 108 167 IPR001611 GO:0005515
Cca06g00526 1134 SUPERFAMILY L domain-like 54 405 - -
Cca06g00526 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 913 925 IPR008271 GO:0004672|GO:0006468
Cca06g00526 1134 Gene3D Ribonuclease Inhibitor 617 696 IPR032675 -
Cca06g00526 1134 Gene3D Ribonuclease Inhibitor 340 434 IPR032675 -
Cca06g00526 1134 Gene3D Ribonuclease Inhibitor 435 531 IPR032675 -
Cca06g00526 1134 Gene3D Ribonuclease Inhibitor 242 339 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00526 Cca-Chr6 15937412 15941742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00526 35 1120 Receptor kinase-like Gene Family AT5G56040 47.917 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca06g00526 PK_Tyr_Ser-Thr 2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00526 - - gmx:100818541 1925.98