Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00523 ATGAACCACGACGACAAACTCACCATGGACCTGGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTCCTCGCGGTTGGTATCCCATGCAAGAGGCTGTTAGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCCTTTCTCAGCACCAGACCCCCAAATTCTCAAAACCAAAGCATTGATCATACCCTAAGTCTTCAGGGGTTTTACAGTAATGCCAAAAAGGGCCAAGCATCATCTTCATCTTCATCACCAACCACATCGAACGAGTCAGTGTCCCCAAAAGCAGCATCATTTGTTGTGAAACCACCTGAGAAAAAGCACCGTCTCCCATCTGCTTACAACCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCGAACCCTGAGATCCCACATCGAGAAGCCTTCAGCGCTGCAGCGAAAAATTGGGCTAGGTTCATTCCAAATTCACCAAGCAGTTCAGTTTCTGCAAGTAAAGTTAATGCTGATTGA 522 0.4751 MNHDDKLTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDHTLSLQGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPSSSVSASKVNAD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00523 173 PANTHER PROTEIN YABBY 6-RELATED 7 169 IPR006780 GO:0007275
Cca06g00523 173 MobiDBLite consensus disorder prediction 82 103 - -
Cca06g00523 173 SUPERFAMILY HMG-box 100 154 IPR036910 -
Cca06g00523 173 Gene3D High mobility group box domain 85 160 IPR036910 -
Cca06g00523 173 CDD HMGB-UBF_HMG-box 117 153 - -
Cca06g00523 173 Pfam YABBY protein 14 156 IPR006780 GO:0007275
Cca06g00523 173 PANTHER PROTEIN CRABS CLAW 7 169 - -
Cca06g00523 173 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00523 Cca-Chr6 15817075 15819592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00523 1 168 C2C2-YABBY Transcription Factor Family AT1G69180 63.372 1.96e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Cca06g00523 YABBY 2.2e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00523 K25796 - gmx:100819079 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00523 06 15817075 15819592 Cca06g00523 06 15817075 15819592 ECH