LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca06g00519	atgggaaggggtagggtacagctgaagaggatagagaacaagatcaatcgccaggtaactttttccaaaaggagaggtgggttgctcaagaaagctcatgagatctctgtactctgtgatgctgaggttgctttgattatcttctccCACAAAGGAAAGCTCTTTGAATATGCAACTGATTCATGTATGGAGAAGATACTGGAACGCCATGAAAGGTATGCCTATGCAGAGAGGCAGCTAGTAGCAAATGATTCTGAGACTCAGGGAAACTGGACCATTGAATATACTCGACTCAAGGCTAAGATTGACCTTTTGCAAAGAAACCACAGGCACTACATGGGAGAAGATTTGGTTTCAATGAGCCTCAAAGAGCTTCAGAGTCTGGAGCAGCAGTTAGATACTGCACTGAAAAACATCCGCACAAGGAAGAACGATCTCATGTACGAGTCCATTTCTGAGCTTCAGAAAAAGGAGAAAAAGATACAAGAGCAGAATAACATCCTCGCAAAGAAGATCAAGGAGAAGGAGCAAGCTGTAGCACAGCAGGCTGCACAATGGGAGCAGCCAAATTACAGGGTTGACACATCTTGCTTACCACAGCAACAACCCCCTCCCAGTTTGAACATAGGTGGCAATAGTTACCATCAGGAGGCACCAGAACTAGGAAGGAACGGTCTTGACCTGACCCTGGAACCACTGTACTCATGCCACCTTGGATGCTTCTGA	726	0.365	MGRGRVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIIFSHKGKLFEYATDSCMEKILERHERYAYAERQLVANDSETQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLVSMSLKELQSLEQQLDTALKNIRTRKNDLMYESISELQKKEKKIQEQNNILAKKIKEKEQAVAQQAAQWEQPNYRVDTSCLPQQQPPPSLNIGGNSYHQEAPELGRNGLDLTLEPLYSCHLGCF	241

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca06g00519	241	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Cca06g00519	241	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Cca06g00519	241	Gene3D	-	13	86	IPR036879	GO:0003677\|GO:0046983
	Cca06g00519	241	CDD	MADS_MEF2_like	2	79	IPR033896	GO:0000977\|GO:0045944
	Cca06g00519	241	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Cca06g00519	241	Coils	Coil	118	145	-	-
	Cca06g00519	241	Coils	Coil	151	181	-	-
	Cca06g00519	241	Pfam	K-box region	84	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Cca06g00519	241	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Cca06g00519	241	PANTHER	TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A	1	216	-	-
	Cca06g00519	241	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	216	-	-
	Cca06g00519	241	SUPERFAMILY	SRF-like	2	92	IPR036879	GO:0003677\|GO:0046983
	Cca06g00519	241	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Cca06g00519	241	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Cca06g00519	241	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Cca06g00519	241	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca06g00519	Cca-Chr6	15651090	15655890	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca06g00519	1	241	MADS-box Gene Family	AT1G26310	62.500	1.02e-108	311

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Cca06g00519		K-box	3e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca06g00519	K09264		-	gmx:100819745	406.371

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca06g00519	06	15651090	15655890	Cca06g00519	06	15651090	15655890	ECH
	Cca06g00519	06	15651090	15655890	Cca07g02283	07	51349164	51359559	ECH
	Cca06g00519	06	15651090	15655890	Cca09g00342	09	8045052	8060440	ECH