Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00502 ATGAGAACAGggaaagggaaccaggaagaggatgagtacgaggaagaagaCTTCGGTTCTTCCAAAAAACAAGGCACTTCCTCTGCCTCTAACACCAACAAAGCAGATGGAAAAGCTATTGACAAAGCTAGTGCGATAAGATCGAAACATTCTGTGACTGAGCAGCGGAGAAGGAGCAAGATAAATGAAAGATTCCAGATATTGAGGGATCTCATACCTCACAGTGATCAAAAGAGGGACACAGCATCATTTTTATTAGAGGTGATCGAGTATGTTCAGTACTTACAGGAGAAGGTCCAAAAGTATGAAGGTTCTTATCAAGGTTGGGGTCAAGAGCCCTCAAAGTTGATGCCATGGAGAAACAGTCATTGGCGTGTTCAAAGCTTTGCCGGTCAACCTACAGGTATAAAGAATGGTTTGGGTCCGGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAGTGTTAATCTCTCTCCAACTATGCTTAGTGGCACCCAAACTACTATAGATGCTGATCAGAGCAGGGATATTGTCAGCAAGACAGCAGAGAGGCAACCTGATTTAGCGAGCAAGGGAATACCTCTGCCCGTTGCTATGCCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGTACTTGCACATCCTCTTCAGGGAACTGTTTCTGATGCACAATCAACTGAATGCCCAACAACTAGTGAACCACAGAACCAGCAGGATGAACTCACGGTTGAAGGAGGGACAATTAGCATCTCTAGTGCATACTCCCAAGGGTTGTTGAATAATTTAACTCAGGCGCTACAAAGTGCTGGTTTAGATTTGTCACAGGCTAGCATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAAAGGATTGAACTGTGGGACCTCTTCTCCCAAGAATCATGACAACCCTTCTTCAAACAATCAAACACTTGCACATTTTAGAGATACAGGTAGTGGAGAAGACTCGGATCAAGCACAAAAACGAATGAAAACATATAAATGA 1017 0.4159 MRTGKGNQEEDEYEEEDFGSSKKQGTSSASNTNKADGKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWGQEPSKLMPWRNSHWRVQSFAGQPTGIKNGLGPVSPFPGKFDESSVNLSPTMLSGTQTTIDADQSRDIVSKTAERQPDLASKGIPLPVAMPMHANMSVPVRSDGVLAHPLQGTVSDAQSTECPTTSEPQNQQDELTVEGGTISISSAYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANKGLNCGTSSPKNHDNPSSNNQTLAHFRDTGSGEDSDQAQKRMKTYK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00502 338 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Cca06g00502 338 MobiDBLite consensus disorder prediction 22 37 - -
Cca06g00502 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 117 IPR036638 GO:0046983
Cca06g00502 338 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 336 IPR044295 GO:0003700|GO:0006351|GO:0046983
Cca06g00502 338 SMART finulus 51 101 IPR011598 GO:0046983
Cca06g00502 338 MobiDBLite consensus disorder prediction 223 242 - -
Cca06g00502 338 MobiDBLite consensus disorder prediction 294 320 - -
Cca06g00502 338 MobiDBLite consensus disorder prediction 321 338 - -
Cca06g00502 338 CDD bHLH_AtBIM_like 44 120 - -
Cca06g00502 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Cca06g00502 338 MobiDBLite consensus disorder prediction 1 58 - -
Cca06g00502 338 MobiDBLite consensus disorder prediction 40 58 - -
Cca06g00502 338 PANTHER TRANSCRIPTION FACTOR BIM2 1 336 - -
Cca06g00502 338 MobiDBLite consensus disorder prediction 294 338 - -
Cca06g00502 338 Gene3D - 43 116 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00502 Cca-Chr6 15308142 15313046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00502 1 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 55.621 3.69e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g00502 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00502 - - gmx:100816055 625.55