Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00494 ATGGGGAGATCTCCATGTTGTGATGAAATTGGTTTGAAGAAAGGACCTTGGACACCTGAAGAAGATCAAAAGCTTATTAACCACGTTAAAAAATATGGTCATGCAAGCTGGAGGGCTCTTCCAAAACTTGCAGGACTCAACAGGTGTGGCAAAAGTTGCAGATTAAGGTGGACGAACTACTTGAGGCCTGACATTAAAAGAGGCAAGTTTTCTCAAGAAGAAGAAAAAACAATTCTGGATCTCCATGCCATCCTTGGAAACAAATGGTCCGCAATAGCAAGTCACTTACCGGGTAGGACAGATAATGAAATCAAGAATTTTTGGAACACCCATCTCAAGAAAAAGCTAATTCAAATGGGTTATGATCCAATGACTCACCAGCCTCGAACTGATGATATCCTCTCATGCTTTTCTCATCTCATAGCTCTAGCTAACATGAAAGAACTCTTAGATCTTCACAATCACCAACCATGGGAATTTCAAAACCTTGCAAGGCTACAAGAAGAGACAATCCAATTGGCCAGGCTCCAACACTTGCAGCAACAACACCTCATGCATCCACAAGCTTCAACTGAGGCAGGTCCTAACACAGTTAATAGTATAAACAGTACCTTCATGAACAACGGCACCATCAATGTTTCAAATGGTGTTTCATATGATGATCAGTTTGAGAACATTATTGTGTCATGTGATGGAATTGGCAGTGTTCAATTTGTTAATGATTCCATCCCTTTCTCTCACATGCCTAAGTTGACAACACCACCTTCTTGTTCCTATGAAGCACCATTAAGCAAGGGCATGGCTCAATTTTATCAAGGAGAAAGTTATAATCCCAATTCTCCATGGCTTCTTTCATGTTCAAGTACTACCCCTTCTTCTCCTTCCCATGTGGTTCCACCTGTGATGGAGGCTTCATTGACTAACATGGAAGATAATTGCACTGTTTGGCCTGAACTCATGCTAGAGGACCCTTTGTTCAAAATGATTTCCTAG 993 0.4119 MGRSPCCDEIGLKKGPWTPEEDQKLINHVKKYGHASWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEKTILDLHAILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDDILSCFSHLIALANMKELLDLHNHQPWEFQNLARLQEETIQLARLQHLQQQHLMHPQASTEAGPNTVNSINSTFMNNGTINVSNGVSYDDQFENIIVSCDGIGSVQFVNDSIPFSHMPKLTTPPSCSYEAPLSKGMAQFYQGESYNPNSPWLLSCSSTTPSSPSHVVPPVMEASLTNMEDNCTVWPELMLEDPLFKMIS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00494 330 CDD SANT 69 112 IPR001005 -
Cca06g00494 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca06g00494 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca06g00494 330 Gene3D - 11 67 - -
Cca06g00494 330 CDD SANT 16 61 IPR001005 -
Cca06g00494 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca06g00494 330 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 265 - -
Cca06g00494 330 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca06g00494 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca06g00494 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 265 - -
Cca06g00494 330 Gene3D - 69 116 - -
Cca06g00494 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca06g00494 330 SMART sant 66 114 IPR001005 -
Cca06g00494 330 SMART sant 13 63 IPR001005 -
Cca06g00494 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00494 Cca-Chr6 14964953 14966749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00494 1 181 MYB Transcription Factor Family AT1G34670 72.928 2.72e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca06g00494 Myb_DNA-binding 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00494 K09422 - gmx:100785374 463.766