Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00485 ATGAGTGACAAAGAGAAGTTTGAGGTGGATAGAAACGAGGATCCTATGAGTTATTCTAGTGGTATGCACTCGGATTGGAGATTTGGGGGTGCACATCTTGCAAGTTCTTCTGTAGGTTTAGTTGGCTTGGGGAATTCTATGAATGTCAACAGAGGGGATTTGATTGGTTCTTCATGTTCCTCTGCTTCAATGATGGACTCATTTGGTCCAAACTACTGGGACAACCCCACCAGTTCCCAAAACTTGGGATTTTGTGACATCAATGGAGGCACTTCAAATACTGCTGGAATCAGAAAAGATGGCTTTGGTTTTGGAAGAGCTGGTCAGGATCATCATGGGGCACTTGAAATGGGTTGGAACCCTGCTAATTCTATGTTACCAAATGGACCAGGGATGTTTCCCCACAGTTTATCTCAGTTTCCAACTGATTCTGGATTCATTGAGAGAGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTGGTGATATGGTGAACTCATATGGGATTCCTCAATCCATGGGGCTGTATGCTGGGAGTGGTGGGACAATGCATGGAGCAAGAGATGCTCTTGCAGGCCATGGCTTGAAATCAGTAACTGGAGGGCAACCTCAGGAAAGTGATATGAATGTAATTGAAGCTACAAAAGATGTGTCTCCATCTGTTGAGCTTCTGGCTGCTAAAGGAAGCCCCCTCAAGAGTGATAAGAGAACTGAAGGCCATGTTATATCTCAAGATGAAGGGAAACAATCTCTTGTTAGGCCCGCTAATGAGTCTGATAGAGCTGAATCTAGTGATGATGGTGGTGGCCAGGGTGATTCGCCAATGATGGAGGGTACTAGTGGGGAACCTTCTACCAAAGGGCTAAACTCAAAGAAAAGGAAAAGAAGTGTGCAGGGTGTTGATAATGATAAGGCCAATGGAGCACCAGAACTACCCAGTGAAGGTGCAAAGGACAACCCTGAGAATCAACAAAAGAGAGACCAACAACCAACATCAACCATCAAGGCTTCTGGGAAGAATGCCAAACTGGGGTCTCAAGCTTCTGATCCACCTAAGGAGGAATATATACACGTTAGGGCTCGGCGGGGTCAGGCAACAAATAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAAAAGATAAGTGAGAGGATGAAGTTTCTTCAGGACCTTGTACCTGGGTGCAGCAAGGTCACTGGCAAGGCAGTAATGCTTGATGAAATCATCAATTATGTACAGTCACTTCAAAGGCAGGTTGAGTTTTTGTCTATGAAACTTGCAACGGTAAATCCCCGGCTGGATTTTAATATTGAAGGGCTTCTTGCTAAAGATATTCTTCAACAACGGCCTGGTCCTTCATCTGCACTGGGGTTTCCTCTAGATGTGTCCATGGCTTTTCCTCCATTACATCCATCTCAACCAGGGCTGATACATCCAATTATTCCCAACATGGGAAACTCATCTGATATCCTTCAAAGAACCATCCATCCACAGTTACCACCCTTGAATGGTGGATTCAAGGAGCCGAATCAGCTGCCTGAGGTATGGGAGGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCAGCAACTGCTCCCGTGAGTAACCAAGATGTTGATGGTAATGTGTCAGGAAGTCAGATGAAAGTTGAACTTTGA 1659 0.4539 MSDKEKFEVDRNEDPMSYSSGMHSDWRFGGAHLASSSVGLVGLGNSMNVNRGDLIGSSCSSASMMDSFGPNYWDNPTSSQNLGFCDINGGTSNTAGIRKDGFGFGRAGQDHHGALEMGWNPANSMLPNGPGMFPHSLSQFPTDSGFIERAARFSCFSGGNFGDMVNSYGIPQSMGLYAGSGGTMHGARDALAGHGLKSVTGGQPQESDMNVIEATKDVSPSVELLAAKGSPLKSDKRTEGHVISQDEGKQSLVRPANESDRAESSDDGGGQGDSPMMEGTSGEPSTKGLNSKKRKRSVQGVDNDKANGAPELPSEGAKDNPENQQKRDQQPTSTIKASGKNAKLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQQRPGPSSALGFPLDVSMAFPPLHPSQPGLIHPIIPNMGNSSDILQRTIHPQLPPLNGGFKEPNQLPEVWEDELHNVVQMSFAATAPVSNQDVDGNVSGSQMKVEL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00485 552 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 10 551 IPR024097 GO:0006355
Cca06g00485 552 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 434 IPR036638 GO:0046983
Cca06g00485 552 MobiDBLite consensus disorder prediction 326 345 - -
Cca06g00485 552 MobiDBLite consensus disorder prediction 230 244 - -
Cca06g00485 552 CDD bHLH_AtBPE_like 355 440 - -
Cca06g00485 552 MobiDBLite consensus disorder prediction 227 352 - -
Cca06g00485 552 Pfam Helix-loop-helix DNA-binding domain 368 416 IPR011598 GO:0046983
Cca06g00485 552 PANTHER BHLH TRANSCRIPTION FACTOR 10 551 - -
Cca06g00485 552 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 365 415 IPR011598 GO:0046983
Cca06g00485 552 Gene3D - 362 435 IPR036638 GO:0046983
Cca06g00485 552 MobiDBLite consensus disorder prediction 253 267 - -
Cca06g00485 552 SMART finulus 371 421 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00485 Cca-Chr6 14688121 14690937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00485 1 530 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 44.834 5.58e-122 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g00485 HLH 7.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00485 - - gmx:100797720 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00485 06 14688121 14690937 Cca06g00485 06 14688121 14690937 ECH