Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00478 ATGGTTCCTAGTGAGATCAGAGGTGTCCACTATCTAGCACCAGAAAATCCATTCCTAGTTCCACCAAACTTTGGACTTCTGCAAAGTGACATCCCAAACTTCCACCTTAACACCCTCCTAAGCACCTTACCAAACTGCCACTACCCCCCTTCAGGCCTTGAATTCGTTGCTCCTCCCTCTTCATGCCTCAGCAGCAACTCCACCTCTGATGAAGCTGATGAAATTCAGTTCAACATCATCGACGAAAGGAAGCACCGCAGAATGATATCCAACCGAGAATCCGCACGCAGATCAAGAATGAGGAAGCAAAAGCACTTGGATGAGCTTTGGTCACAGGTTGTTAGGCTCAGAAGTGAGAACCACAACCTTATTGACAAACTCAACCATGTGTCTGAGTCCCATGACAGAGTGGTCCAAGAGAATGCACGCCTCAAAGAAGAAGCTTCTGATCTTCGCCAAATGCTAGCAGACATGCAAATTGGAACCTCCTTTGCTTGCACCATGGAGGATTTGGAGGACCTTCCATGCAACAACACTTCTCAACTCAAACCTGATCCATCAAACCAATCGATCACCCCTGCAGACATGATTCATGAATGA 600 0.47 MVPSEIRGVHYLAPENPFLVPPNFGLLQSDIPNFHLNTLLSTLPNCHYPPSGLEFVAPPSSCLSSNSTSDEADEIQFNIIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRSENHNLIDKLNHVSESHDRVVQENARLKEEASDLRQMLADMQIGTSFACTMEDLEDLPCNNTSQLKPDPSNQSITPADMIHE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00478 199 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Cca06g00478 199 PANTHER BZIP PROTEIN (ATBZIP48) 1 192 - -
Cca06g00478 199 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 192 IPR044521 -
Cca06g00478 199 Coils Coil 127 161 - -
Cca06g00478 199 Gene3D - 81 136 - -
Cca06g00478 199 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 81 144 IPR004827 GO:0003700|GO:0006355
Cca06g00478 199 SMART brlzneu 79 143 IPR004827 GO:0003700|GO:0006355
Cca06g00478 199 MobiDBLite consensus disorder prediction 177 199 - -
Cca06g00478 199 SUPERFAMILY Leucine zipper domain 83 133 IPR046347 GO:0003700|GO:0006355
Cca06g00478 199 Pfam bZIP transcription factor 83 132 IPR004827 GO:0003700|GO:0006355
Cca06g00478 199 CDD bZIP_plant_GBF1 84 135 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00478 Cca-Chr6 14403111 14404121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00478 23 171 bZIP Transcription Factor Family AT3G30530 58.710 1.28e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca06g00478 bZIP_1 2e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00478 - - gmx:778126 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00478 06 14403111 14404121 Cca06g00478 06 14403111 14404121 ECH