Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00467 ATGACGAAAGATACTTCTGATGCCGATTCCCAACACAAACGTCTTGGTCTTTTAAAAGATCAAGTTCACTTGGTTAAAAGGAAAGACTCCGATCGCTATGAAATTGCTCCAATCCAAGACCAACTATCATTTGAGAAGGGTTTCTTTATCGTAATTCGTGCATGCCAATTGTTAGCCCAAAAGAATGATGGAATAATATTGGTAGGGGTGGCAGGCCCTTCAGGGGCAGGGAAGACTGTATTTACTGAAAAGATACTCACCTTCATGCCCAGCATTGCAGTCATTTCAATGGATAATTACAATGATTCAAGTCGAATTGTTGATGGAAATTTTGATGATCCACGCTTAACAGACTATGACACTTTGCTCCAGAATCTACATGATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGGACAGTAGAAGCCCCAAGTTCTCGTATTGTAATTATAGAGGGCATCTATGCATTGAGTGAGAAGTTGCGACCTCTACTGGACCTTCGAGTCTCTGTTACAGGGGGAGTTCACCTTGACCTTGTAAAACGAGTAATACGTGATATACAACGTGCTGGTCAAGAACCTGAAGAAATTATTCATCAAATATCTGAGACAGTGTATCCGATGTACAAGGCCTTTATTGAGCCAGATCTCCAGACAGCACATATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGCCCTACTTACATATTGAAGTCAGCAAGGGATGTAGCAGTGGATAAAATTAAAGCTGTTCTCTCTGAGGATTTTATGGAAACAACAGAGCAAACTTATGACATATATCTTCTACCACCCGGTGAAGATCCAGAAACTTGCCAATCATATTTACGAATGCGAAATAAAGATGGGAAATACAGTCTCATGTTCGAGGAATGGGTGACAGATAATCCATTCGTCATATCACCAAGAATTACTTTTGAGGTCAGCGTACGCCTTCTTGGTGGACTAATGGCCTTGGGATACACAATAGCTACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATCGGGTTTTTGTGAAACTAGATTGGCTTGAGCAACTTAACAGACATTATGTTCAGGTACAGGGAAGAGATCGATTAGTTGTAAAATACATTGGAGAGCAGCTGGGTCTAGAAGGTTCCTACATTCCTCGTACCTACATTGAACAAATTCAAATTGAAAAGCTTGTGGATGAGGTTATGGCCCTACCAGATGATTTGAAGACAAAGCTCAGCCTAGATGAGGATTTGGTGTCAAGCCCCAAAGAAGCACTTTCTAGAGCCTCTGCTGACAGAGTTGCCATGAGAAATAAACATCTGAGGAGATATCAGGCATTTCTCGCAGTCAGCGTCAGATCATGCATCAATTGGACAATCTCAATAATCTTATCAGGGGGAGCTTGGGGGAGAAGTCTCACCAAACAAGAACCAGCAGGAAAAGTCCTGATCCAGAATCAGATTCCACGGGAGCACGCATTATGGCGGCGGTGGCAGTTGGTTGTTTGGGGATCTTCTTGA 1569 0.4168 MTKDTSDADSQHKRLGLLKDQVHLVKRKDSDRYEIAPIQDQLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKILTFMPSIAVISMDNYNDSSRIVDGNFDDPRLTDYDTLLQNLHDLKEGKPVQVPIYDFKSSSRTGYRTVEAPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQSPTYILKSARDVAVDKIKAVLSEDFMETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDRVFVKLDWLEQLNRHYVQVQGRDRLVVKYIGEQLGLEGSYIPRTYIEQIQIEKLVDEVMALPDDLKTKLSLDEDLVSSPKEALSRASADRVAMRNKHLRRYQAFLAVSVRSCINWTISIILSGGAWGRSLTKQEPAGKVLIQNQIPREHALWRRWQLVVWGSS 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00467 522 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Cca06g00467 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 236 IPR027417 -
Cca06g00467 522 Gene3D - 254 412 - -
Cca06g00467 522 CDD UMPK_like 67 239 - -
Cca06g00467 522 PANTHER URIDINE KINASE 5 458 - -
Cca06g00467 522 SUPERFAMILY CYTH-like phosphatases 265 407 IPR033469 -
Cca06g00467 522 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 5 458 - -
Cca06g00467 522 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Cca06g00467 522 Gene3D - 66 245 IPR027417 -
Cca06g00467 522 Pfam CYTH domain 270 404 IPR023577 -
Cca06g00467 522 PRINTS Uridine kinase signature 65 82 - -
Cca06g00467 522 PRINTS Uridine kinase signature 224 237 - -
Cca06g00467 522 PRINTS Uridine kinase signature 132 147 - -
Cca06g00467 522 PRINTS Uridine kinase signature 188 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00467 Cca-Chr6 14202310 14219182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00467 66 236 PRT Gene Family AT5G40870 27.222 7.55e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00467 K00876 - gmx:100781286 867.07