Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00445 ATGAGCCCTCTAATCAGACTTGCCTTAGCAATAAACTTAATTTCCAGTTCTCACACCTTCAGAAGGCATATTCATTACATAACTCTCCCTCACACCCTTCTAAAACGAACCCTATATTTCATTTTTCACCACTTGTGCTATCCCCTATCATGCACCCTCTTCGGACAAGATCATGGCACGTGCCATCACGTGTCACGTGAAGGTGTTGAAGATTGTGCCGTGTGTCTTTGCAAAATGGGAGAACGAGAAGAGATTACGAGGCTGCGGTGTGAACATGTCTTTCACAGAGATTGCATGAATACATGGGTTGGTTTGGACCATTCCACTTGTCCTCTTTGTAGAGATTCATTGGGTCCAAAAAGGGACATGGGAGAGTTAGTTTTTTCTATTAACACACATGATTGTGAGATTAAGTGGTTACGATGA 426 0.4272 MSPLIRLALAINLISSSHTFRRHIHYITLPHTLLKRTLYFIFHHLCYPLSCTLFGQDHGTCHHVSREGVEDCAVCLCKMGEREEITRLRCEHVFHRDCMNTWVGLDHSTCPLCRDSLGPKRDMGELVFSINTHDCEIKWLR 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00445 141 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Cca06g00445 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 121 IPR013083 -
Cca06g00445 141 PANTHER OS08G0157400 PROTEIN 62 122 - -
Cca06g00445 141 SMART ring_2 72 113 IPR001841 -
Cca06g00445 141 PANTHER RING ZINC FINGER PROTEIN-RELATED 62 122 - -
Cca06g00445 141 Pfam Ring finger domain 71 114 IPR001841 -
Cca06g00445 141 SUPERFAMILY RING/U-box 71 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00445 Cca-Chr6 13764211 13764837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00445 70 117 C3H Transcription Factor Family AT1G15100 50.000 8.96e-12 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00445 K16282 - vvi:104878972 95.1301