Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca06g00442 | ATGTTCATGAAATACTTAACTTCATTTTACACTTATCTGAAATGGGTGTTAAATTTCCTTATCTATTGTCCCTTCTACATGCTCCATGATTCTCAAATTCCATTGATTGGGGAAGACCAAAGCATATGCCACTATGCACCCACCCAAGGCTCAGATGAAGATGTTGATTGTGCCATTTGTCTAAGCAAAATTGTGCATGGTGAAGAGATTAGAGTCCTTAGGTGTGAACATTTGTTTCACAGAAAGTGCTTGGATACATGGGTTGGTCTCAAATTTGCAACTTGCCCTCTTTGA | 294 | 0.3878 | MFMKYLTSFYTYLKWVLNFLIYCPFYMLHDSQIPLIGEDQSICHYAPTQGSDEDVDCAICLSKIVHGEEIRVLRCEHLFHRKCLDTWVGLKFATCPL | 97 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca06g00442 | 97 | Pfam | RING-like zinc finger | 56 | 84 | IPR001841 | - | |
| Cca06g00442 | 97 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 97 | IPR001841 | - | |
| Cca06g00442 | 97 | SUPERFAMILY | RING/U-box | 51 | 97 | - | - | |
| Cca06g00442 | 97 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 3 | 97 | - | - | |
| Cca06g00442 | 97 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 97 | IPR013083 | - | |
| Cca06g00442 | 97 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED | 3 | 97 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca06g00442 | Cca-Chr6 | 13704085 | 13704378 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca06g00442 | 56 | 97 | C3H Transcription Factor Family | AT1G15100 | 54.762 | 1.40e-11 | 55.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca06g00442 | - | - | tcc:108662781 | 90.1225 |