Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00441 ATGGAGAAAGATCACAACTATTCGGCACCACCATCCATGCCTCCAAGCTTCAACACACTAGACTACTCCCTAGACCAACACCACCATCTGTATCCGCCAAATCAGCACCACCTAATGAAGTTCCAAAGTGAAAGCAACAACAATGGATCAATGGTGGATTACATGCCCCAAACACCACCACCACCTCATGGCTTCTATGGTAATAGCAGCTCAGCCACAACATCCTATGATAAGCTGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCCAAGTTGGCACTGAACCAAACTAAAAGCTGTGAAGAATCTGGAATAGACCCGGTTTACTTTCTCAAGTTTCCTGTGTTGAATGACAAGATggaggaggagggggaggaggagcagAATCTGATGGTGAATAACAATGACCCTGATGGTGAAGATGAAGATCATGATGAGAGGTTCAACTTGGTGGAGGATAAGTCAAGGGTGGGAGATCAAGAGGGAATGATGATGATGATGAGAGAAGATGAAGAGACTCGGGTTTCTGATGACAACAACTCTGTGCAGATTCGGTTTCTTGGCCATGAAGAGCCTCAGAAGAATTGTGCAGCGCAGGAGAACAAGAACAAGAGGAAGAGACCAAGAACTGTTAAGACTAGTGAAGAAGTTGAGAGCCAACGCATGACTCACATAGCGGTTGAGAGGAACCGTAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATAATTGGGGGGGCCATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAATCACAAAAGAGGAGGAGGCTACTTGGAGAAGCTCAAACAAGACAAGTAGGGGATCCCTCTCTTGCAGCACAACAGCAACCTCCTTTCTTTCCACCTTTGCCTATTCCAAATGAGCAGATGAAGCTTGTGGAGTTGGAGACCGGGCTTCGCGAAGAAACCGCGGAGAGTAAGTCTTGTTTGGCTGATGTTGAAGTGAAGCTTCTAGGATTTGATGCCATGATCAAAATCCTCTCAAGGAGGAGGCCAGGACAGTTGATCAAGACCATTGCTGCACTAGAAGATCTGCAATTGATTATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCCTTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACGGCAGAAGATATAGCCAGCTCGAGATTGAAAAGCAAGTATCTGACTCTGAGGTGCAAAGTCAACGTGTCCCGTACCATCCCTTCACTTGGTCTTTTGACTTGTCAGAAGTGA 1329 0.4462 MEKDHNYSAPPSMPPSFNTLDYSLDQHHHLYPPNQHHLMKFQSESNNNGSMVDYMPQTPPPPHGFYGNSSSATTSYDKLSFADVMQFADFGPKLALNQTKSCEESGIDPVYFLKFPVLNDKMEEEGEEEQNLMVNNNDPDGEDEDHDERFNLVEDKSRVGDQEGMMMMMREDEETRVSDDNNSVQIRFLGHEEPQKNCAAQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQTRQVGDPSLAAQQQPPFFPPLPIPNEQMKLVELETGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSRLKSKYLTLRCKVNVSRTIPSLGLLTCQK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00441 442 MobiDBLite consensus disorder prediction 197 223 - -
Cca06g00441 442 PANTHER TRANSCRIPTION FACTOR FAMA 30 413 - -
Cca06g00441 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 221 288 IPR036638 GO:0046983
Cca06g00441 442 SMART finulus 227 278 IPR011598 GO:0046983
Cca06g00441 442 MobiDBLite consensus disorder prediction 123 147 - -
Cca06g00441 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 272 IPR011598 GO:0046983
Cca06g00441 442 PANTHER TRANSCRIPTION FACTOR FAMA 30 413 IPR044283 GO:0003700|GO:0010052
Cca06g00441 442 CDD bHLH_AtFAMA_like 224 291 - -
Cca06g00441 442 Pfam Helix-loop-helix DNA-binding domain 222 273 IPR011598 GO:0046983
Cca06g00441 442 CDD ACT_UUR-ACR-like 353 412 - -
Cca06g00441 442 Gene3D - 212 287 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00441 Cca-Chr6 13670311 13675636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00441 46 413 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 58.647 1.99e-139 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca06g00441 HLH 9.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00441 - - pvu:PHAVU_003G033900g 662.529