Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00436 ATGAGGGGTGAAAGGAGAAGGAAGTTGCGTCTTAGCAAGATCTATTCATTTGCTTGTGGGAAGCAATCTCTCAAGGTGGATCATTCACATATTGGAGAGAGAGGGTATTCCAGGGTGGTGTTTTGCAATGAGCCAGGGAGCTTTGAGGCTGGGATAAGGAATTATGCTGATAATTCTGTGAGCTCCACAAAGTATAATGCTGTTACTTTCTTACCTAAGTCACTTTTTGAGCAGTTTAGGAGGGTGGCCAATTTCTTCTTTTTGGTAACTGGCATCTTGGCCTTCACTAAGCTGGCTCCTTATACAGCTGTCAGTGCTATCCTTCCTCTGATTGTTATTACTATAGCAACTATGATCAAAGAGGCTATTGAAGATTGGCGAAGGAAACAGCAGGATATTGAAGTAAATAATAGAAGAGTTAAAATGCATAAAGGACATGGAACTTTTGAATATACTGAGTGGAAGAATCTGAAGGTAGGGCATATAGTGAAGATAATGAAGGATGAATTCTTCCCTGCAGACCTCCTATTACTTTCATCCTGTTATGAGGATGCAGTCTGCTATGTAGAGACTATGAACTTGGATGGAGAGACAAATTTGAAGTTAAAATAA 612 0.4003 MRGERRRKLRLSKIYSFACGKQSLKVDHSHIGERGYSRVVFCNEPGSFEAGIRNYADNSVSSTKYNAVTFLPKSLFEQFRRVANFFFLVTGILAFTKLAPYTAVSAILPLIVITIATMIKEAIEDWRRKQQDIEVNNRRVKMHKGHGTFEYTEWKNLKVGHIVKIMKDEFFPADLLLLSSCYEDAVCYVETMNLDGETNLKLK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00436 203 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 203 - -
Cca06g00436 203 SUPERFAMILY Calcium ATPase, transduction domain A 145 203 IPR008250 -
Cca06g00436 203 Gene3D - 112 203 - -
Cca06g00436 203 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 203 - -
Cca06g00436 203 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Cca06g00436 203 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 140 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00436 Cca-Chr6 13577623 13579013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00436 9 203 Primary Pumps ATPases AT3G25610 71.795 6.17e-96 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00436 K01530 - gmx:100785037 362.459