Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00408 ATGGGTATTTCCAGGGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCCTGGAGGAAGAAGAGAAAGTATGAGCTTGGTCGTCAGCCTGCTAACACTAAGCTGTCAAGCAATAAGACAGTAAGGAGGATCCGTGTTAGAGGTGGCAATGTGAAATGGAGGGCACTGAGATTGGATACTGGAAATTACTCCTGGGGAAGTGAAGCTGTAACTCGCAAGACTCGTATACTTGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGGACTCAGACACTTGTCAAAAGTGCTATTGTTCAGGTTGATGCCGCTCCATTTAAACAGTGGTACCTTCAGCACTATGGTGTTGATATTGGTAGGAAAAAGAAGTCTGCTGCCAAGAAGGATTCTGCCGAGGAGGGTGATGCTACTGCTGTTGCTACTGCAGAAGAATCCAAAAAGAGTAATCATGTGCAGAGAAAATTGGAGAAGCGCCAGAAGGATCGAAGTCTCGATCCCCACATTGAGGAGCAGTTTGGTGGTGGTCGTTTGCTTGCTAGCATTTCATCTCGACCCGGTCAATGTGGCAGAGCTGATGGCTACATTCTGGAAGGTAAGGAGTTGGAATTTTACATGAAGAAACTTCAAAGAAAGAAGGGAAAGGGTGCTGCTTGA 666 0.4655 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKSAAKKDSAEEGDATAVATAEESKKSNHVQRKLEKRQKDRSLDPHIEEQFGGGRLLASISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00408 221 MobiDBLite consensus disorder prediction 1 40 - -
Cca06g00408 221 Pfam Ribosomal protein S8e 5 200 IPR022309 -
Cca06g00408 221 Gene3D - 165 218 - -
Cca06g00408 221 Gene3D - 32 164 - -
Cca06g00408 221 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Cca06g00408 221 CDD Ribosomal_S8e_like 5 200 - -
Cca06g00408 221 PANTHER 40S RIBOSOMAL PROTEIN S8 1 221 - -
Cca06g00408 221 TIGRFAM eS8: ribosomal protein eS8 1 202 IPR001047 GO:0003735|GO:0005840|GO:0006412
Cca06g00408 221 MobiDBLite consensus disorder prediction 11 26 - -
Cca06g00408 221 PANTHER 40S RIBOSOMAL PROTEIN S8 1 221 IPR001047 GO:0003735|GO:0005840|GO:0006412
Cca06g00408 221 MobiDBLite consensus disorder prediction 150 173 - -
Cca06g00408 221 MobiDBLite consensus disorder prediction 128 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00408 Cca-Chr6 12724897 12727690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00408 1 209 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.732 1.37e-126 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00408 K02995 - gmx:100794937 396.356