Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00402 ATGAACTTGATTAACTCTTCTGATGGTGTTTTTAACCTTATATCTCATATTTTGCAGCACTGGACTCCTCAAGCTACTGCAGAATTTTCCATGATTCTTTGGAGCATGTGGCACAGCCAGAATGCTTTGCATTGGAGTAACACTCCTTGGAACCAAAATGAGATCAACCTTCATGCCTCCTTCATGCTTCATGATTGGGCCACTGCTAATAGAGCTGCTCCGATTCATCACTCTAAACCTCTATCTAGGCAACGATGGTCTCCTCCTCCCCAAGGGTCGCTTAAGTGCAACATTGCCACTCACTTCTTTCCGGTGGAAGGCCTTACCGGAATAGGCATCTGCATTAGAGACTATCAAGGTGCCTTTATTAGAGCTTGTTCAACCACCATCAAAGGCTGTTTGGAGCCCCATGTTGGTAAAGTCTTTGCTTTTCTTCATGCTATCAACTGGACCCATAACCAGAACTTGGAGAATACTATTTTTGAAATAGATTGTAATCGTATCTCTTTCTATTTCTCCAATCACCACTCTGTTGACATAACTGAACTTGGTTGCCTTCTTGACCAATGGTTTTCTTTTCAAACCCCTTTTCCTTTCTTCGAACGCACTGCACCGAATTCAATCCTACTCTTCCACACGGGAGAAAAAAAGACTTCAAATTTGAAGATGGCTGCGACTTTTGCTTCCAGATGTTCTCGTGTGGGCCGTTCTCTTCTCGGGGGATTAAGCAACAGTTCCCCTGGTTTATTTTCCACATCACATGAGCTGACATGCGGCAATTTCTTTTCTCAGCAACAACGCACCTTCATTCAGATGAGGACTGTTCTCAAGGTTGTGGATAACTCTGGGGCTAAGAAGGTGATGTGCATACAAGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACAATAATAGCATCTGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGAAAGGTTGTGTATGGGGTAGTTGTGCGTGCAGCAATGCAAAGGGGGCGTTGTGATGGCAGTGAGGTCAAGTTTGATGATAATGCTGTGGTGCTTGTTGACAAGCAAGGCCAACCTATTGGGACCAGAGTTTTTGGACCAGTGCCTCATGAACTGAGGCAAAAGAAGCATGTCAAGATTCTTACCTTGGCGGGACATATTGCATAA 1167 0.4413 MNLINSSDGVFNLISHILQHWTPQATAEFSMILWSMWHSQNALHWSNTPWNQNEINLHASFMLHDWATANRAAPIHHSKPLSRQRWSPPPQGSLKCNIATHFFPVEGLTGIGICIRDYQGAFIRACSTTIKGCLEPHVGKVFAFLHAINWTHNQNLENTIFEIDCNRISFYFSNHHSVDITELGCLLDQWFSFQTPFPFFERTAPNSILLFHTGEKKTSNLKMAATFASRCSRVGRSLLGGLSNSSPGLFSTSHELTCGNFFSQQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00402 388 SUPERFAMILY Ribosomal protein L14 270 387 IPR036853 GO:0003735|GO:0005840|GO:0006412
Cca06g00402 388 SMART Ribosomal_L14_2 269 388 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cca06g00402 388 ProSitePatterns Ribosomal protein L14 signature. 326 352 IPR019972 -
Cca06g00402 388 TIGRFAM rplN_bact: ribosomal protein uL14 270 387 IPR005745 GO:0003735|GO:0006412|GO:0015934
Cca06g00402 388 Pfam Ribosomal protein L14p/L23e 270 387 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cca06g00402 388 Hamap 50S ribosomal protein L14 [rplN]. 269 388 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cca06g00402 388 Gene3D Ribosomal protein L14 269 388 IPR036853 GO:0003735|GO:0005840|GO:0006412
Cca06g00402 388 Pfam Reverse transcriptase-like 106 198 IPR002156 GO:0003676|GO:0004523
Cca06g00402 388 PANTHER 50S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE ISOFORM X1 242 388 - -
Cca06g00402 388 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 242 388 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00402 Cca-Chr6 12562908 12572113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00402 280 371 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.364 5.17e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00402 K02874 - ccaj:109817166 322.013