Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00399 ATGGTGAATTGTGATTACTGTTGTAAGAACGATTCCGGAATTCGAGACGATGATGGTTTCCTGTATTGTAGGGAATGTGGGAGGACGCGGGAAGCCTACAATTTTTCTCAGGAGGCAACCTTTGTGAAAAGTTCGTCTGGGCAGAACAAATTATCAGGCCAATATGTAAGATCAGTTCAGAGTGACTTCTCTGCTTCACGTCAAAGGACTTTAGATAGAGCTTATGATGATCTCAGATATTTAAGTTCCAGCCTTGGAGTGAACGATGATAATATGGCCAACCAAGCATTGGCTTTCTATAGAATAGCACTTGAAAGGAGTTTCACCAGGGGACGCCGATCAGAGCATGTACAGGGTGCTTGTCTATATATTGCATTCCGGGAAAATAATAAGCCATTCCTTCTTATAGATTTTTCAAATAATTTAAGGACAAATGTTTATGTGTTAGGTGCAGTTTTTTTGAAGCTTTGTAAACTACTAAGTCTTGAAGAGCACCCAATAGTTCAAAAACCTATCGATCCCAGTCTTTTCATTTATAAGTATACAAATAATTTGTTAAAGCAAAGGAATGTGTTTGTCTCTGAAACTGCACTTAGTATTATTGCCAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGTGGGTTATGTGGTGCAGCAATATACATGGCTGCGCTTGCACATGGTTTCAAGTGCACTAAGTCAGATATTCTAAGAATCGTCCATGTTTGTGAAGCAACATTGACTAAGCGGTTGGTAGAGTTTGAGAATACAGAGTCTGCTAGTTTGACAATTGAGGAGTTGAATACGATGGCAAAGGAGCATGAAAACAATCCAGTTCAAATACCAAATGGTGAACTGAACAAATGTACTTCAAAAGAACTACTATGTGAACACAAGGGTAGTTCTGAGTCCTATTTTGCACTTGGATTATGTGAAACATGTTACAGGGAGTTTGATAAACTATCTGGTGGACTTGGTGGGGGTTTGGATCCTCCTGCATTCCAACGTGCGGAGAAGGAGAAAATGATAAAATCACATTCTGAGGAAAATTCTAATCAATCACACAATTTGGTGGAAGAGTCAAACAATGAATGCAGGAGCCAAATAGAAGAATTACGTTCCTCAGTGCCAGAAAGTATTGTGGTTAATGAAAATGTGGCCACTAAAGATGGTGAGCATGATGAGTCACATAAAGAAGATGATCTGAACACAGAAACTCAAAATGAATCAGAAAGTCTTTCTGATATTGATGATCAAGAGGTTGATGGCTACCTTCACAGTGAGGAGGAAAAGCACTACAAGAAGATTTTATGGGAAAACCTGAATCGCGAGTATCTTGAGGAACAAGCAGCCAAGGAAGCAGCTGCAGAAGCTTCTAAGAAAGCTTTTGAGGAAAATTTCCAAAACTGTTCTGAGGATTTGCTAGCAGCTAGAGAACTTGCTGAATATGCCAGTGCAGCTGCAGCAAAGTCCAGAAAGGAAATGAAACTAAGACGAGCTCAAGAGGCAAAAAGTTACGGTCCTACTCAATCTGCTTTGGATGCCACTAAGCAAATGTTGAGAACCAAGAGGCTCAGCTCCAAAGTCAATTATGATTGCTTGTTAAAATTATTTGACGAACCTGAAGCACCAGAGAATCAGAAGAATCCCAAGAAAGTACGGTTTGAGCTACCCACCAATGATAATGATAATTTTGAGTCAAAGTTAGAGGACAATATTAAAGATGATGAACCGGGATCAGCTGATGATTTTGAGGATGGTGATATGCACGGAGAATATGAAAATAATTTGTATCAAGAAACTCACGAGACTTATGAATATGATGATGGTGGTTATGATTATGATGATTACTGA 1863 0.3945 MVNCDYCCKNDSGIRDDDGFLYCRECGRTREAYNFSQEATFVKSSSGQNKLSGQYVRSVQSDFSASRQRTLDRAYDDLRYLSSSLGVNDDNMANQALAFYRIALERSFTRGRRSEHVQGACLYIAFRENNKPFLLIDFSNNLRTNVYVLGAVFLKLCKLLSLEEHPIVQKPIDPSLFIYKYTNNLLKQRNVFVSETALSIIASMKRDWMQTGRKPSGLCGAAIYMAALAHGFKCTKSDILRIVHVCEATLTKRLVEFENTESASLTIEELNTMAKEHENNPVQIPNGELNKCTSKELLCEHKGSSESYFALGLCETCYREFDKLSGGLGGGLDPPAFQRAEKEKMIKSHSEENSNQSHNLVEESNNECRSQIEELRSSVPESIVVNENVATKDGEHDESHKEDDLNTETQNESESLSDIDDQEVDGYLHSEEEKHYKKILWENLNREYLEEQAAKEAAAEASKKAFEENFQNCSEDLLAARELAEYASAAAAKSRKEMKLRRAQEAKSYGPTQSALDATKQMLRTKRLSSKVNYDCLLKLFDEPEAPENQKNPKKVRFELPTNDNDNFESKLEDNIKDDEPGSADDFEDGDMHGEYENNLYQETHETYEYDDGGYDYDDY 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00399 620 Pfam Brf1-like TBP-binding domain 417 542 IPR011665 -
Cca06g00399 620 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Cca06g00399 620 MobiDBLite consensus disorder prediction 343 422 - -
Cca06g00399 620 CDD CYCLIN 193 248 IPR013763 -
Cca06g00399 620 SMART cyclin_7 76 158 IPR013763 -
Cca06g00399 620 SMART cyclin_7 176 259 IPR013763 -
Cca06g00399 620 Gene3D - 64 165 - -
Cca06g00399 620 Coils Coil 260 280 - -
Cca06g00399 620 Coils Coil 449 469 - -
Cca06g00399 620 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 545 IPR000812 GO:0006352|GO:0070897
Cca06g00399 620 MobiDBLite consensus disorder prediction 546 578 - -
Cca06g00399 620 MobiDBLite consensus disorder prediction 546 620 - -
Cca06g00399 620 MobiDBLite consensus disorder prediction 390 408 - -
Cca06g00399 620 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Cca06g00399 620 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Cca06g00399 620 MobiDBLite consensus disorder prediction 352 385 - -
Cca06g00399 620 Gene3D - 173 265 - -
Cca06g00399 620 SUPERFAMILY Cyclin-like 172 269 IPR036915 -
Cca06g00399 620 MobiDBLite consensus disorder prediction 587 611 - -
Cca06g00399 620 Gene3D Single helix bin 409 460 - -
Cca06g00399 620 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 545 IPR029529 GO:0000126|GO:0000995|GO:0006383
Cca06g00399 620 CDD CYCLIN 74 143 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00399 Cca-Chr6 12449872 12467856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00399 1 526 Inorganic Solute Cotransporters AT2G01280 41.791 3.01e-104 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00399 K15196 - gmx:100789154 714.531