Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00394 atggctcaaCATATCTCAGCATCAAAAGGATATGTAGATATTTCTTCCTTTCTTGTTGAACAAGGAGTAAATATCAATTCCACAGATAAATTTGGAGCCACTCCCTTGCTTGAAGCCATCAAGAATGGACATGAAGAAGTAGCATCTGTACTTGTTAATTCGGGAGCGATCCTTACTATTGATGATGTTGGTAACTTTCTCTGCATGACTGTTGTAAAGAAGGACTTGGACCTTTTAAAAAGGGTTTTGGCTTGTGGAATCAATCCAAATGCCAAAAATTACGATCACCGTACACCTCTTCACGTAGCTGCCTCTCAAGGTTTGATTACAATGGCTGAATTACTACTACAAGCAGGAGCAAGTGTTTTATCTAAGGACACGTATGGACCAAATATTGAGTTAGCATTCTTATCAGACAATACTTTTTATTCCATTAGCACCTTCATTGTTCTAATATGGGGAAATACACCTCTTCTTGAAGCTCATACCGGTGGAAATAGAAATATGATCAAAATGTTCGAAGTTGCAAAAGTTTCTCAGTTGGCTGAGTTGTCCAGCAGTATTCATGAAACTCAAGCAACACCAATGTTGCAGTCAAGAAATGAAATTCCCAGAAAGAGGTGTATAGTATTTCCTTTCCACCCATGGGATCAGAAAGAGGAAAGAAAAGAGGGAGTGGTCCTATGGGTTCCACAAAGCATTAAAGAGCTTATAAAGGAATCGATGAAACATTTGGACATTCCAAATGGTTCCTGTATTTTATCAGAACAAGGTGGAAAAATTCTTTATGTGGACATGATTAACAATGATGAGAAGCTATTTCTGGTTAATGAAGCACAGAATGGGGTGAAAAATTATGGTTATCCCAGTGTCCAGACACAGAAGTAG 888 0.3773 MAQHISASKGYVDISSFLVEQGVNINSTDKFGATPLLEAIKNGHEEVASVLVNSGAILTIDDVGNFLCMTVVKKDLDLLKRVLACGINPNAKNYDHRTPLHVAASQGLITMAELLLQAGASVLSKDTYGPNIELAFLSDNTFYSISTFIVLIWGNTPLLEAHTGGNRNMIKMFEVAKVSQLAELSSSIHETQATPMLQSRNEIPRKRCIVFPFHPWDQKEERKEGVVLWVPQSIKELIKESMKHLDIPNGSCILSEQGGKILYVDMINNDEKLFLVNEAQNGVKNYGYPSVQTQK 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00394 295 PANTHER POTASSIUM CHANNEL AKT1 3 130 IPR045319 GO:0005249|GO:0006813
Cca06g00394 295 ProSiteProfiles Ankyrin repeat region circular profile. 95 126 - -
Cca06g00394 295 ProSiteProfiles Ankyrin repeat profile. 31 63 IPR002110 GO:0005515
Cca06g00394 295 SUPERFAMILY Ankyrin repeat 4 173 IPR036770 -
Cca06g00394 295 PANTHER POTASSIUM CHANNEL AKT1 146 279 IPR045319 GO:0005249|GO:0006813
Cca06g00394 295 PANTHER POTASSIUM CHANNEL SKOR-LIKE 146 279 - -
Cca06g00394 295 SMART ANK_2a 31 60 IPR002110 GO:0005515
Cca06g00394 295 SMART ANK_2a 2 27 IPR002110 GO:0005515
Cca06g00394 295 SMART ANK_2a 95 124 IPR002110 GO:0005515
Cca06g00394 295 SMART ANK_2a 62 91 IPR002110 GO:0005515
Cca06g00394 295 Gene3D - 64 199 IPR036770 -
Cca06g00394 295 ProSiteProfiles Ankyrin repeat profile. 95 127 IPR002110 GO:0005515
Cca06g00394 295 Pfam Ankyrin repeats (many copies) 83 130 IPR002110 GO:0005515
Cca06g00394 295 Gene3D - 2 63 IPR036770 -
Cca06g00394 295 ProSiteProfiles Ankyrin repeat region circular profile. 31 62 - -
Cca06g00394 295 PANTHER POTASSIUM CHANNEL SKOR-LIKE 3 130 - -
Cca06g00394 295 Pfam Ankyrin repeats (3 copies) 2 60 IPR002110 GO:0005515
Cca06g00394 295 Pfam KHA, dimerisation domain of potassium ion channel 206 275 IPR021789 -
Cca06g00394 295 ProSiteProfiles Ankyrin repeat profile. 1 30 IPR002110 GO:0005515
Cca06g00394 295 ProSiteProfiles KHA domain profile. 207 293 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00394 Cca-Chr6 12282298 12285402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00394 3 126 Ion Channels AT5G37500 58.871 2.08e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00394 K21867 - ccaj:109807132 406.757