Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00376 ATGGCAAACAATGGTCAAGCATCTTCTTTTTTTGcaccatcatcaccaccaacaacatcgacaccaccactatcaccGTCATTCACACCTACCCTTGATACCCATAGTAATTTAGATGTATTTCCTCATGAACCGAAGAAGCAAGTGCAACCACAACCTACTATGGTTGCAGTTGCTAAGAAGCCCAAAGGGAGGCCACTTGGGTCAAAAAGTAAGCCCAAACCGGCCATGGAAATTTTCAAACCCATATTTCTTATTGTTCCCACTGGCATGGACATTGTTGATGCCATCATCGACTTTAGTCACAAGCGAGATGTCAGCATCGCAGTGCACCATGCTTCAGGTGCCATCTCTAAAGTTAACATTTTAAATTCTTTATCCCCTTCCAATTATTTGTCCTTTCAGGGAAACTTGCATATGTTTTATCTCTCAGGCTTTTACACCAAAAGCCTTTCACCTTTTCCCCCTGAGAACATTCCTTATTCCTTCTTTAACATTCAATTCTCAAAGGATTGGACCCACCAAATCTATGGTGGCCTTGTTGGACAAAAACTTATTGCTGCAGAGCCTGTGCATATCATGGTTTCTATGATAAAAAAACATGAGTATCACAAGGTGGTGAATCCCATCACATATCCAAATGTTCAACCTGTTACGAAGAGTACTCAATCTACCTGCTATGTTGCTAATGGTCTCAATGGCATCACCAACAACACTACCAATCACCCTAGTTTCTCTGTTGGAGCTTCAAGCTCATCCTTAATGAAAATCCAACCTTATGTTGATCCTCCAAGAAATGTGAACATGCTCTATTGGCCGAATGTTCAACTTTTTATGAAGAGTACTCATGCTACTAGCTATGTTGCTAATGCTCTCAATGGCATCACCAACAACACTACCAATCACTCTGGTTTCTCTATTGAAGCTTCAAGCTCATCTTCAATGAATATCCAACCACATGTTGATCCTCCTCGAGATGTGAACATGTTCTATTGGAACAAACCCACCAACTAG 1014 0.3905 MANNGQASSFFAPSSPPTTSTPPLSPSFTPTLDTHSNLDVFPHEPKKQVQPQPTMVAVAKKPKGRPLGSKSKPKPAMEIFKPIFLIVPTGMDIVDAIIDFSHKRDVSIAVHHASGAISKVNILNSLSPSNYLSFQGNLHMFYLSGFYTKSLSPFPPENIPYSFFNIQFSKDWTHQIYGGLVGQKLIAAEPVHIMVSMIKKHEYHKVVNPITYPNVQPVTKSTQSTCYVANGLNGITNNTTNHPSFSVGASSSSLMKIQPYVDPPRNVNMLYWPNVQLFMKSTHATSYVANALNGITNNTTNHSGFSIEASSSSSMNIQPHVDPPRDVNMFYWNKPTN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00376 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 30 240 - -
Cca06g00376 337 MobiDBLite consensus disorder prediction 1 73 - -
Cca06g00376 337 MobiDBLite consensus disorder prediction 1 15 - -
Cca06g00376 337 ProSiteProfiles PPC domain profile profile. 77 219 IPR005175 -
Cca06g00376 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 211 - -
Cca06g00376 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 197 IPR005175 -
Cca06g00376 337 Gene3D - 81 223 - -
Cca06g00376 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 240 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00376 Cca-Chr6 11533122 11534169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00376 24 206 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 29.293 8.67e-16 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00376 - - ccaj:109792018 342.043