Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00361 ATGGCAACTAGACTTCAGTTTGAGAATTGTTGTGAAGTTGGAGTGTTTTCAAAACTTACCAATGCATATTGTTTGGTTGCTATTGGAGGTTCTGAAAACTTTTACAGCTCATTTGAAGCTGAGTTAGCAGATGTTATCCCAGTGATCAAGACCTCCATTAGTGGCATTCGTACAGTTGGTCGTCTTTGTGTTGGAAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAGCTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTCTTGTTCAGCGTATTGATGAAAGATTAACTGCTTTGGGAAATTGTATAGCATGTAATGACCATGTGGCCTTGACACACATTGATCTTGACAAGGAAACTGAGGATATGATTGCAGATGTTCTTAAAGTAGAAGTTTTCAGGCAGACTATTGCCTCTAATATCATTGTAGGAAGTTACTGTACATTTTCCAACAGAGGTGGTTTGGTAAGCACAAGACGGGTCCTCTTGAATATCCTATCTTCAAAATATATGTACTATCTTGTGAGCATACATGCACTTAGTGCAGGTTCACCCTCATACATCCATTGA 585 0.3966 MATRLQFENCCEVGVFSKLTNAYCLVAIGGSENFYSSFEAELADVIPVIKTSISGIRTVGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVLVQRIDERLTALGNCIACNDHVALTHIDLDKETEDMIADVLKVEVFRQTIASNIIVGSYCTFSNRGGLVSTRRVLLNILSSKYMYYLVSIHALSAGSPSYIH 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00361 194 Pfam eIF-6 family 4 164 IPR002769 GO:0042256|GO:0043022
Cca06g00361 194 SMART eIF6neu2 3 180 IPR002769 GO:0042256|GO:0043022
Cca06g00361 194 Gene3D - 1 172 - -
Cca06g00361 194 SUPERFAMILY Pentein 1 163 - -
Cca06g00361 194 Hamap Translation initiation factor 6 [eif6]. 1 194 IPR002769 GO:0042256|GO:0043022
Cca06g00361 194 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 164 IPR002769 GO:0042256|GO:0043022
Cca06g00361 194 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 162 IPR002769 GO:0042256|GO:0043022
Cca06g00361 194 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00361 Cca-Chr6 11015654 11021061 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00361 1 161 Eukaryotic Initiation Factors Gene Family AT3G55620 84.472 4.46e-103 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00361 K03264 - ming:122066887 294.278