Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00356 ATGAAGGTTTTCGTCAAGACTCTCAAGGGAACGCACTTCGAAATTGAAGTGAACCCCTCAGACACGCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCACCAAGGAAAAGTTCTAAAGGATGGTACTACTTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGCTATCAAAGACTAAGAGCTCATCTGGTGAAGGATCCACTGCTTCAACTGCACCTTCGGCTAAGACAAGTGCAGCTCCTACTTCAACCTCTGTGTCTGCTGCACCTCAAGCTCCTGCTTCATCTGGAGCAACGcctacacctgttactgcacaagcagctactcctgctcctgttcctgcaccagctcctgctcctATATCTTCAGGCTCTGCTGTGCCAGGGTCTGATATATATGGGCAGGCAGCATCCAATCTTGTTGCTGGAAGTAACTTGGAGGAAACAGTTCAGCAAATCCTTGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTGTTCGTGCTCTTCGTGCTGCTTATAACAATCCTGAGAGAGCTGTTGAATATTTGTATTCCGGCATACCAGAGGAAGCTGAAGCTCCACCTGTTACCCGGGTACCTGCTAGTGCTCAACCTGCAAATCCTCCAGCTGCTGCTCCTCAGGCAGAACAACCAGCATCTGTTCCTTCTAGTGGACCTAATGCTAATCCTTTAGACCTCTTCCCCCAGGGCATTCCTAATGTTGGTTCTGGTGCTGCTGGTGCTGGCTCTTTAGACTTTCTGCGCAACAGTCAACAGTTCCAAGCCTTACGTGCAATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTGCAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCAAGAGCATCAAGCTGATTTCCTTCGCCTAATTAATGAACCTGTTGAAGGTGGTGAGGGAAATATACTGGGACAACTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAACGCCTGGAAGCAATGGGTTTCGATCGTGCAACTGTATTGGAGGTGTACTTTGCTTGTAACAAAAACGAGGAACTTGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAATAA 1188 0.4369 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKTKSSSGEGSTASTAPSAKTSAAPTSTSVSAAPQAPASSGATPTPVTAQAATPAPVPAPAPAPISSGSAVPGSDIYGQAASNLVAGSNLEETVQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEEAEAPPVTRVPASAQPANPPAAAPQAEQPASVPSSGPNANPLDLFPQGIPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00356 395 MobiDBLite consensus disorder prediction 125 139 - -
Cca06g00356 395 MobiDBLite consensus disorder prediction 79 124 - -
Cca06g00356 395 SMART uba_6 164 204 IPR015940 -
Cca06g00356 395 SMART uba_6 351 388 IPR015940 -
Cca06g00356 395 SMART CBM 268 311 IPR006636 -
Cca06g00356 395 CDD UBA1_Rad23_plant 158 207 - -
Cca06g00356 395 SMART ubq_7 1 75 IPR000626 GO:0005515
Cca06g00356 395 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 394 - -
Cca06g00356 395 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Cca06g00356 395 SUPERFAMILY UBA-like 332 394 IPR009060 GO:0005515
Cca06g00356 395 Gene3D - 157 207 - -
Cca06g00356 395 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Cca06g00356 395 Gene3D - 343 390 - -
Cca06g00356 395 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 348 389 IPR015940 -
Cca06g00356 395 SUPERFAMILY UBA-like 161 216 IPR009060 GO:0005515
Cca06g00356 395 Gene3D - 261 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Cca06g00356 395 Gene3D - 1 80 - -
Cca06g00356 395 MobiDBLite consensus disorder prediction 215 251 - -
Cca06g00356 395 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Cca06g00356 395 MobiDBLite consensus disorder prediction 79 140 - -
Cca06g00356 395 Pfam XPC-binding domain 270 325 IPR015360 GO:0003684|GO:0006289|GO:0043161
Cca06g00356 395 TIGRFAM rad23: UV excision repair protein Rad23 1 394 IPR004806 GO:0006289
Cca06g00356 395 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 162 205 IPR015940 -
Cca06g00356 395 PRINTS DNA repair protein Rad23 signature 296 318 IPR004806 GO:0006289
Cca06g00356 395 PRINTS DNA repair protein Rad23 signature 345 361 IPR004806 GO:0006289
Cca06g00356 395 PRINTS DNA repair protein Rad23 signature 362 376 IPR004806 GO:0006289
Cca06g00356 395 PRINTS DNA repair protein Rad23 signature 377 392 IPR004806 GO:0006289
Cca06g00356 395 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 394 - -
Cca06g00356 395 CDD Ubl_Rad23 1 74 - -
Cca06g00356 395 Pfam UBA/TS-N domain 164 202 IPR015940 -
Cca06g00356 395 Pfam UBA/TS-N domain 351 386 IPR015940 -
Cca06g00356 395 SUPERFAMILY XPC-binding domain 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00356 Cca-Chr6 10700797 10709525 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00356 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.02e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00356 K10839 - gmx:100809066 602.823