Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00327 ATGGTGGAGCCTCTTAACAAGGTGAAGAAATTAAAGCAGAAGCGAAACCGGGTTCGTGAGTGCAAAATGGCGAGAAAATTGCGCATCATTTGTGATGATCCTGATGCTACCGACTCTGATGAAGATGAGAATGAGAAGATTAATGGTGGGAAGGTGAAGAGAAGTATGATTGAGGTTACTCTTCCCCTTGTTTCGTTTAACTCTGTCACTGCAGAAGAAACTAGCACCCAGAGCTCAAACAACCACCAACAGAAGAAGGTGAGTGTTTTGGCCAAAAAAACATCCTCAGTGAAGAGACAACCTTGTGGGAAGTACAAGGGTGTTAGGATGAGAAAATGGGGCAAATGGGCTTCAGAGATTCGTGACCCTTTCAGAGGTGTTCGTGTCTGGTTGGGCACTTACAACACTGCAGAAGAGGCTTTTCAAGCTTATGAGACCAAGAGGCTTGAGTTTGAAGCCAGGGCCAAGGCTGAGAAGAACAACAACGATGGTTCTGTATCTGACTCCAAGTCTTGTACTTTGGATGACTCAGAGAGTTTGGTGTCACACACATCCCCATCTTCAGTGCTCGAATTGGATAATTCCGTTGAAAGTGGTAAGGTTTCAAGCAATGAGGCCAAAAGTTTGGAGGATGAATTTGCTGAGTTGGAAATTCCGGATTTTAGTATGCTGAATGTGGCATCTCTGGTTGATTTGGATTGTTTGGCGTTTGATGGCTTGGAGCATGTCTTTGATGATGATCTTGGAGGGTTGGAGGACATTCATATTTCTGGTTTTGATGACAATGTGCCTAGTGATCTTCCTGATTTCGATTTTGATGACTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTATAG 882 0.4399 MVEPLNKVKKLKQKRNRVRECKMARKLRIICDDPDATDSDEDENEKINGGKVKRSMIEVTLPLVSFNSVTAEETSTQSSNNHQQKKVSVLAKKTSSVKRQPCGKYKGVRMRKWGKWASEIRDPFRGVRVWLGTYNTAEEAFQAYETKRLEFEARAKAEKNNNDGSVSDSKSCTLDDSESLVSHTSPSSVLELDNSVESGKVSSNEAKSLEDEFAELEIPDFSMLNVASLVDLDCLAFDGLEHVFDDDLGGLEDIHISGFDDNVPSDLPDFDFDDFGADEFAGWIEEPLNIPCV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00327 293 MobiDBLite consensus disorder prediction 72 93 - -
Cca06g00327 293 MobiDBLite consensus disorder prediction 157 196 - -
Cca06g00327 293 SMART rav1_2 104 158 IPR001471 GO:0003700|GO:0006355
Cca06g00327 293 Gene3D AP2/ERF domain 103 161 IPR036955 GO:0003700|GO:0006355
Cca06g00327 293 CDD AP2 104 144 IPR001471 GO:0003700|GO:0006355
Cca06g00327 293 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Cca06g00327 293 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Cca06g00327 293 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 293 - -
Cca06g00327 293 PIRSF PTI6 5 285 IPR017392 GO:0003700
Cca06g00327 293 SUPERFAMILY DNA-binding domain 104 151 IPR016177 GO:0003677
Cca06g00327 293 MobiDBLite consensus disorder prediction 164 196 - -
Cca06g00327 293 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Cca06g00327 293 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 12 293 - -
Cca06g00327 293 ProSiteProfiles AP2/ERF domain profile. 104 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00327 Cca-Chr6 8973172 8974122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00327 10 292 AP2-EREBP Transcription Factor Family AT1G68550 36.102 2.24e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca06g00327 AP2 5.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00327 - - gmx:102667919 350.132